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Spg011548 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011548
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold8:13248286..13252336
RNA-Seq ExpressionSpg011548
SyntenySpg011548
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]7.3e-1750.88Show/hide
Query:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLP-----KEKLNPSFKLKPLTIYYREKTTTHH--PKSITIQVL
        +G+D++ TC FHAGAKGH+LEQC+ F   VQEL+DSK L VA + HQ   I  VE++        E  + + K K LTI+Y EK    +   K ITI V 
Subjt:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLP-----KEKLNPSFKLKPLTIYYREKTTTHH--PKSITIQVL

Query:  APFKYKSSKAVPWR
        APF+YKSSKAVPW+
Subjt:  APFKYKSSKAVPWR

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.7e-1951.38Show/hide
Query:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK--TTTHHPKSITIQVLAPFKY
        E +D+N TC +HAGA+GH LEQC  F ++VQEL+D K L V Q+ HQ+  I  VE +   E  + ++K KPLT+ YREK    ++  + ITIQV APF+Y
Subjt:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK--TTTHHPKSITIQVLAPFKY

Query:  KSSKAVPWR
         SSKAVPW+
Subjt:  KSSKAVPWR

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.2e-1346.09Show/hide
Query:  KKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFT---SHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEI
        +K EQEKT++DIEE+REK DAI++ALEK K +A T+ P      PQ    F PSF       R   E  M Q+TTYNPLYDIP GQ+P PL +       
Subjt:  KKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFT---SHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEI

Query:  PMASQTGASYFKPEE
        P  +  G  + +PE+
Subjt:  PMASQTGASYFKPEE

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]7.8e-1954.21Show/hide
Query:  FDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK--TTTHHPKSITIQVLAPFKYKS
        +D++ TC FHAGAKGHSLEQC+ F  +VQEL+DSK L VA + HQ   I  VE++   E  + + K K LTI+Y EK    +   K ITI V APF+YKS
Subjt:  FDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK--TTTHHPKSITIQVLAPFKYKS

Query:  SKAVPWR
        SKAVPW+
Subjt:  SKAVPWR

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]2.8e-1646.43Show/hide
Query:  KKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFTSHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEIPMA
        +K EQEKT++DIEE+REK D I + LEK K  A+      PI  PQ   P+PP +   +R   E  MPQ+TTYNPLYD+P+GQYP    K  Q  +IP  
Subjt:  KKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFTSHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEIPMA

Query:  SQTGASYFKPEE
          T   + +PE+
Subjt:  SQTGASYFKPEE

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.0e-1850.45Show/hide
Query:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK----TTTHHPKSITIQVLAPF
        +G+D++ TC FH GAKGHSLEQC+ F  +VQEL+DSK L  A +H +      VE++L  E  + S K KPLTI+YREK    + +  P  IT+    PF
Subjt:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK----TTTHHPKSITIQVLAPF

Query:  KYKSSKAVPWR
        +YKSSKAVPW+
Subjt:  KYKSSKAVPWR

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.6e-1954.13Show/hide
Query:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREKTTTHH--PKSITIQVLAPFKY
        +G+D++ TC FHAGAKGHSLEQC+ F  +VQEL+DSK L VA + HQ   I  VE++   E  + + K K LTI+Y EK    +   K ITI V APF+Y
Subjt:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREKTTTHH--PKSITIQVLAPFKY

Query:  KSSKAVPWR
        KSSKAVPW+
Subjt:  KSSKAVPWR

TrEMBL top hitse value%identityAlignment
A0A6J1D099 Ribonuclease H5.0e-0362.86Show/hide
Query:  VAVVTKE-EEMGPWIYPCPENFELNNWSTIELPSF
        VA VT+E E++GP++Y CP+ FEL+NWS I+LPSF
Subjt:  VAVVTKE-EEMGPWIYPCPENFELNNWSTIELPSF

A0A6J1D099 Ribonuclease H3.5e-1750.88Show/hide
Query:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLP-----KEKLNPSFKLKPLTIYYREKTTTHH--PKSITIQVL
        +G+D++ TC FHAGAKGH+LEQC+ F   VQEL+DSK L VA + HQ   I  VE++        E  + + K K LTI+Y EK    +   K ITI V 
Subjt:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLP-----KEKLNPSFKLKPLTIYYREKTTTHH--PKSITIQVL

Query:  APFKYKSSKAVPWR
        APF+YKSSKAVPW+
Subjt:  APFKYKSSKAVPWR

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.3e-1951.38Show/hide
Query:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK--TTTHHPKSITIQVLAPFKY
        E +D+N TC +HAGA+GH LEQC  F ++VQEL+D K L V Q+ HQ+  I  VE +   E  + ++K KPLT+ YREK    ++  + ITIQV APF+Y
Subjt:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK--TTTHHPKSITIQVLAPFKY

Query:  KSSKAVPWR
         SSKAVPW+
Subjt:  KSSKAVPWR

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.1e-1346.09Show/hide
Query:  KKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFT---SHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEI
        +K EQEKT++DIEE+REK DAI++ALEK K +A T+ P      PQ    F PSF       R   E  M Q+TTYNPLYDIP GQ+P PL +       
Subjt:  KKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFT---SHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEI

Query:  PMASQTGASYFKPEE
        P  +  G  + +PE+
Subjt:  PMASQTGASYFKPEE

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222313.8e-1954.21Show/hide
Query:  FDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK--TTTHHPKSITIQVLAPFKYKS
        +D++ TC FHAGAKGHSLEQC+ F  +VQEL+DSK L VA + HQ   I  VE++   E  + + K K LTI+Y EK    +   K ITI V APF+YKS
Subjt:  FDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK--TTTHHPKSITIQVLAPFKYKS

Query:  SKAVPWR
        SKAVPW+
Subjt:  SKAVPWR

A0A6J1DZ90 Ribonuclease H1.3e-1646.43Show/hide
Query:  KKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFTSHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEIPMA
        +K EQEKT++DIEE+REK D I + LEK K  A+      PI  PQ   P+PP +   +R   E  MPQ+TTYNPLYD+P+GQYP    K  Q  +IP  
Subjt:  KKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFTSHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEIPMA

Query:  SQTGASYFKPEE
          T   + +PE+
Subjt:  SQTGASYFKPEE

A0A6J1DZ90 Ribonuclease H4.9e-1950.45Show/hide
Query:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK----TTTHHPKSITIQVLAPF
        +G+D++ TC FH GAKGHSLEQC+ F  +VQEL+DSK L  A +H +      VE++L  E  + S K KPLTI+YREK    + +  P  IT+    PF
Subjt:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREK----TTTHHPKSITIQVLAPF

Query:  KYKSSKAVPWR
        +YKSSKAVPW+
Subjt:  KYKSSKAVPWR

A0A6J1E2J7 Ribonuclease H7.6e-2054.13Show/hide
Query:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREKTTTHH--PKSITIQVLAPFKY
        +G+D++ TC FHAGAKGHSLEQC+ F  +VQEL+DSK L VA + HQ   I  VE++   E  + + K K LTI+Y EK    +   K ITI V APF+Y
Subjt:  EGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREKTTTHH--PKSITIQVLAPFKY

Query:  KSSKAVPWR
        KSSKAVPW+
Subjt:  KSSKAVPWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATGCAGGCTCAATCAGAAGAGTCAGAAGCTTTAAAAAGTTATGCAAGCTCGTTAGAACGTCAGCTCCAAGCATTTCAGAGTGCAAGCGAACAATTGTCACTAGA
GAGAGGACAACTAGAAGAGAAATACTCCTCATTAAGGGGAGGTTATGCCATTCTGAGAGACGACATGCAAATAATTCTTGGGAAAGTAAATCGGACCATGAACACTATCA
AGATCATGGCTAGAAGAGCCCAAGGATTTGCAGAATGGGCAAGGGATCTGCTAGAGAATACATCACCTATGGCCTCTAATGCGGAGGAGTTATTTGAGTTTTTAGGGATG
ATTCGTAGAGACCTGAGGCGTAGAACAAGGATTATGGGAAAAAAGGGTGAACAAGAGAAGACTAAGCGGGACATCGAGGAAATCAGGGAAAAGGATGATGCAATCATTGT
CGCTTTAGAAAAGAGCAAAATGGTGGCAAATACGACTGCACCAGACACTCCGATCGAAAATCCTCAAGCTGGCCTACCATTTCCACCCAGTTTCACTTCACATGTTCGTA
CGACGGTAGAAGCATCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCACTGTTTAAAGAAGGCCAAATTCCCGAAATC
CCCATGGCTAGCCAAACTGGTGCTTCTTATTTCAAGCCAGAAGAAGGATTCGATGATAATCCGACTTGCCTATTTCATGCTGGGGCAAAGGGGCATTCTTTGGAACAATG
TCATCATTTTCATAAGAGGGTCCAAGAACTGGTGGATTCAAAATTTCTTGTGGTTGCCCAAGCCCATCACCAGGACAATGAAATAGGCGCCGTGGAAGAATTGCTGCCTA
AAGAAAAATTGAATCCATCTTTCAAATTGAAGCCACTCACGATCTATTACCGTGAGAAGACTACTACTCATCATCCAAAGTCGATCACCATTCAGGTGCTGGCTCCTTTC
AAGTACAAGAGTTCCAAGGCAGTACCATGGAGAGATTTTGCAGTTGCAGTAGTGACTAAAGAGGAAGAAATGGGTCCATGGATCTACCCGTGCCCAGAAAACTTCGAGCT
CAACAATTGGAGTACTATTGAATTACCGTCATTTGCTGTTAAGATGTCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATATGCAGGCTCAATCAGAAGAGTCAGAAGCTTTAAAAAGTTATGCAAGCTCGTTAGAACGTCAGCTCCAAGCATTTCAGAGTGCAAGCGAACAATTGTCACTAGA
GAGAGGACAACTAGAAGAGAAATACTCCTCATTAAGGGGAGGTTATGCCATTCTGAGAGACGACATGCAAATAATTCTTGGGAAAGTAAATCGGACCATGAACACTATCA
AGATCATGGCTAGAAGAGCCCAAGGATTTGCAGAATGGGCAAGGGATCTGCTAGAGAATACATCACCTATGGCCTCTAATGCGGAGGAGTTATTTGAGTTTTTAGGGATG
ATTCGTAGAGACCTGAGGCGTAGAACAAGGATTATGGGAAAAAAGGGTGAACAAGAGAAGACTAAGCGGGACATCGAGGAAATCAGGGAAAAGGATGATGCAATCATTGT
CGCTTTAGAAAAGAGCAAAATGGTGGCAAATACGACTGCACCAGACACTCCGATCGAAAATCCTCAAGCTGGCCTACCATTTCCACCCAGTTTCACTTCACATGTTCGTA
CGACGGTAGAAGCATCCATGCCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCACTGTTTAAAGAAGGCCAAATTCCCGAAATC
CCCATGGCTAGCCAAACTGGTGCTTCTTATTTCAAGCCAGAAGAAGGATTCGATGATAATCCGACTTGCCTATTTCATGCTGGGGCAAAGGGGCATTCTTTGGAACAATG
TCATCATTTTCATAAGAGGGTCCAAGAACTGGTGGATTCAAAATTTCTTGTGGTTGCCCAAGCCCATCACCAGGACAATGAAATAGGCGCCGTGGAAGAATTGCTGCCTA
AAGAAAAATTGAATCCATCTTTCAAATTGAAGCCACTCACGATCTATTACCGTGAGAAGACTACTACTCATCATCCAAAGTCGATCACCATTCAGGTGCTGGCTCCTTTC
AAGTACAAGAGTTCCAAGGCAGTACCATGGAGAGATTTTGCAGTTGCAGTAGTGACTAAAGAGGAAGAAATGGGTCCATGGATCTACCCGTGCCCAGAAAACTTCGAGCT
CAACAATTGGAGTACTATTGAATTACCGTCATTTGCTGTTAAGATGTCAAAGTAA
Protein sequenceShow/hide protein sequence
MNMQAQSEESEALKSYASSLERQLQAFQSASEQLSLERGQLEEKYSSLRGGYAILRDDMQIILGKVNRTMNTIKIMARRAQGFAEWARDLLENTSPMASNAEELFEFLGM
IRRDLRRRTRIMGKKGEQEKTKRDIEEIREKDDAIIVALEKSKMVANTTAPDTPIENPQAGLPFPPSFTSHVRTTVEASMPQHTTYNPLYDIPVGQYPFPLFKEGQIPEI
PMASQTGASYFKPEEGFDDNPTCLFHAGAKGHSLEQCHHFHKRVQELVDSKFLVVAQAHHQDNEIGAVEELLPKEKLNPSFKLKPLTIYYREKTTTHHPKSITIQVLAPF
KYKSSKAVPWRDFAVAVVTKEEEMGPWIYPCPENFELNNWSTIELPSFAVKMSK