; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011552 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011552
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold8:14536462..14539037
RNA-Seq ExpressionSpg011552
SyntenySpg011552
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]9.0e-2944.81Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNR
        MQSQPLQNLGA ++    LF LSY EGTK     ++       S  L   E   +++SNQKLYL+   R   +        SG            PRGNR
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNR

Query:  SSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAI
         SLQT ELDKT               V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G       DDV WLHA+
Subjt:  SSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAI

Query:  FRAKLVGGPGEG
        FRAK VGGPG G
Subjt:  FRAKLVGGPGEG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-2544.02Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQT
        MQSQPLQNLGA   T     G S   G   +F     I           V++SNQKLYL   S           G SG+  W+        RGNRSSLQ+
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQT

Query:  GELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAIFRA
        GELD T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G       DDV WLHA+FRA
Subjt:  GELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAIFRA

Query:  KLVGGPGEG
        K VGGPG G
Subjt:  KLVGGPGEG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.0e-2842.27Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFR----------
        MQSQPLQNLGA   T      +S   G   +F     I           V++SNQKLYLI+  REPRI      G          F F +          
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFR----------

Query:  ----PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSNEED
            PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  ++SSTW+ELY E VH+  + +             EG       D
Subjt:  ----PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSNEED

Query:  DVRWLHAIFRAKLVGGPGEG
        DV WLH +FRAK+ GGPG G
Subjt:  DVRWLHAIFRAKLVGGPGEG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.0e-2843.87Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNR
        MQSQPLQNLGA ++    LF LSY EGTK     ++      +S  L   E   +++ NQKLYL                               PRGNR
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNR

Query:  SSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAI
         SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G       DDV WLHA+
Subjt:  SSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAI

Query:  FRAKLVGGPGEG
        FRAK VGGPG G
Subjt:  FRAKLVGGPGEG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.2e-2544.02Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQT
        MQSQPLQNLGA   T     G S   G   +F     I           V++SNQKLYL   S           G SG+  W+        RGNRSSLQ+
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQT

Query:  GELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAIFRA
        GELD T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G       DDV WLHA+FRA
Subjt:  GELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAIFRA

Query:  KLVGGPGEG
        K VGGPG G
Subjt:  KLVGGPGEG

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein4.4e-2944.81Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNR
        MQSQPLQNLGA ++    LF LSY EGTK     ++       S  L   E   +++SNQKLYL+   R   +        SG            PRGNR
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNR

Query:  SSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAI
         SLQT ELDKT               V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G       DDV WLHA+
Subjt:  SSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAI

Query:  FRAKLVGGPGEG
        FRAK VGGPG G
Subjt:  FRAKLVGGPGEG

A0A5A7V9N3 Reverse transcriptase5.9e-2644.02Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQT
        MQSQPLQNLGA   T     G S   G   +F     I           V++SNQKLYL   S           G SG+  W+        RGNRSSLQ+
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQT

Query:  GELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAIFRA
        GELD T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G       DDV WLHA+FRA
Subjt:  GELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAIFRA

Query:  KLVGGPGEG
        K VGGPG G
Subjt:  KLVGGPGEG

A0A5A7VIY9 Uncharacterized protein9.7e-2942.27Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFR----------
        MQSQPLQNLGA   T      +S   G   +F     I           V++SNQKLYLI+  REPRI      G          F F +          
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFR----------

Query:  ----PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSNEED
            PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  ++SSTW+ELY E VH+  + +             EG       D
Subjt:  ----PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSNEED

Query:  DVRWLHAIFRAKLVGGPGEG
        DV WLH +FRAK+ GGPG G
Subjt:  DVRWLHAIFRAKLVGGPGEG

A0A5D3CJX3 CCHC-type domain-containing protein9.7e-2943.87Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNR
        MQSQPLQNLGA ++    LF LSY EGTK     ++      +S  L   E   +++ NQKLYL                               PRGNR
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNR

Query:  SSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAI
         SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G       DDV WLHA+
Subjt:  SSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAI

Query:  FRAKLVGGPGEG
        FRAK VGGPG G
Subjt:  FRAKLVGGPGEG

A0A5D3DSY7 Putative Retrotransposon protein5.9e-2644.02Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQT
        MQSQPLQNLGA   T     G S   G   +F     I           V++SNQKLYL   S           G SG+  W+        RGNRSSLQ+
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQT

Query:  GELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAIFRA
        GELD T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G       DDV WLHA+FRA
Subjt:  GELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSNEEDDVRWLHAIFRA

Query:  KLVGGPGEG
        K VGGPG G
Subjt:  KLVGGPGEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAG
GATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAGGTCGAATCAGAAACTCTATTTGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGCTC
GGGGCAATTCTGGGCAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAG
CTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAA
CGTTCAGGAGGGTCAGCGGGTATCGAATGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGAGGGTCCATTAGCTCCCA
CTGGTAGCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAG
GATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAGGTCGAATCAGAAACTCTATTTGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGCTC
GGGGCAATTCTGGGCAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAG
CTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAA
CGTTCAGGAGGGTCAGCGGGTATCGAATGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGAGGGTCCATTAGCTCCCA
CTGGTAGCTTGTAA
Protein sequenceShow/hide protein sequence
MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYRSNQKLYLIKGSREPRICVVCARGNSGQIGWESRFHFFRPRGNRSSLQTGELDKTVEIE
LPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSNEEDDVRWLHAIFRAKLVGGPGEGPLAPTGSL