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Spg011558 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011558
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:12715875..12719192
RNA-Seq ExpressionSpg011558
SyntenySpg011558
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-1157.83Show/hide
Query:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSSTW
        QVESEA  G VGKLIQ+PTT     PRGNR SLQTREL K                 +VE+EL VPDTLPTS ES  S+SSTW
Subjt:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSSTW

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.8e-1140.27Show/hide
Query:  TTPRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSST-----WEGQWVS-------LEEDDVRWLHAIFRTKLVGGSG
        T PRGNR SLQT EL K                 +VE+EL +PDTLPTSAESS S+SST     +E   V        +  DDV WLHA+FR K  GG G
Subjt:  TTPRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSST-----WEGQWVS-------LEEDDVRWLHAIFRTKLVGGSG

Query:  GG---PEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLE
        GG   P   +RR       +  D +Q   Q    R + +  GQ   G E
Subjt:  GG---PEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLE

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.7e-1137.67Show/hide
Query:  PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSST----------------------------WEGQWVSLEEDDVRWLHAIFRTKLVGGSGGG-
        PRGNR +L T +L K VE+EL VPDTLPTSAESS+S+SST                            WEG    +  DD+ WLHA+F  K  G  GGG 
Subjt:  PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSST----------------------------WEGQWVSLEEDDVRWLHAIFRTKLVGGSGGG-

Query:  --PEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLE
          P   +RR       +  D  Q   Q    R + +  GQ  +G E
Subjt:  --PEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLE

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]4.4e-1472.73Show/hide
Query:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSSTW
        QVESEA+FGMV KLIQ+PTT     PRGNR S QT +L K VE+EL VPDTLPTSAESS S+SSTW
Subjt:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSSTW

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-1157.83Show/hide
Query:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSSTW
        QVESEA  G VGKLIQ+PTT     PRGNR SLQTREL K                 +VE+EL VPDTLPTS ES  S+SSTW
Subjt:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSSTW

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase2.2e-1157.83Show/hide
Query:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSSTW
        QVESEA  G VGKLIQ+PTT     PRGNR SLQTREL K                 +VE+EL VPDTLPTS ES  S+SSTW
Subjt:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSSTW

A0A5A7TKT0 Reverse transcriptase3.8e-1140.27Show/hide
Query:  TTPRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSST-----WEGQWVS-------LEEDDVRWLHAIFRTKLVGGSG
        T PRGNR SLQT EL K                 +VE+EL +PDTLPTSAESS S+SST     +E   V        +  DDV WLHA+FR K  GG G
Subjt:  TTPRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSST-----WEGQWVS-------LEEDDVRWLHAIFRTKLVGGSG

Query:  GG---PEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLE
        GG   P   +RR       +  D +Q   Q    R + +  GQ   G E
Subjt:  GG---PEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLE

A0A5A7UAH6 CCHC-type domain-containing protein1.3e-1137.67Show/hide
Query:  PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSST----------------------------WEGQWVSLEEDDVRWLHAIFRTKLVGGSGGG-
        PRGNR +L T +L K VE+EL VPDTLPTSAESS+S+SST                            WEG    +  DD+ WLHA+F  K  G  GGG 
Subjt:  PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSST----------------------------WEGQWVSLEEDDVRWLHAIFRTKLVGGSGGG-

Query:  --PEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLE
          P   +RR       +  D  Q   Q    R + +  GQ  +G E
Subjt:  --PEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLE

A0A5D3BET3 Uncharacterized protein2.1e-1472.73Show/hide
Query:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSSTW
        QVESEA+FGMV KLIQ+PTT     PRGNR S QT +L K VE+EL VPDTLPTSAESS S+SSTW
Subjt:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSSTW

A0A5D3BV68 Reverse transcriptase2.2e-1157.83Show/hide
Query:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSSTW
        QVESEA  G VGKLIQ+PTT     PRGNR SLQTREL K                 +VE+EL VPDTLPTS ES  S+SSTW
Subjt:  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSSTW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTGGAGCTAAATATGATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGGTTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTT
TCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATTTGGTATGGTCGGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATAGGTCAAGTCTACAAACCA
GGGAACTAGCTAAGATTGTAGAGGTCGAACTCACGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGAGGGTCAATGGGTATCG
TTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGTAGGTGGTTCGGGAGGGGGCCCGGAAATGGGACAGCGTCGCGATACTATCGGCATAGC
GTTGCGACGCTGTGACGTCAGCCAACTTGTTCGCCAAGAAATGGGACGACGCTGTGCAGATTCCAGAACTGGGCAGGCGCGGATTGGGCTTGAAATTGGGCAACTTCAAT
TCTTTTTGGACCTCTTCTTCATGGTTGACTTTCTTAGGCTTCCCCTTCACCCATGCATGGAAATTTGGGCTTGGATGGCTCATTTTAGGGCATTTTCCACCAAAAATCCA
CAAAGTGCTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTGGAGCTAAATATGATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGGTTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTT
TCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATTTGGTATGGTCGGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATAGGTCAAGTCTACAAACCA
GGGAACTAGCTAAGATTGTAGAGGTCGAACTCACGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGAGGGTCAATGGGTATCG
TTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGTAGGTGGTTCGGGAGGGGGCCCGGAAATGGGACAGCGTCGCGATACTATCGGCATAGC
GTTGCGACGCTGTGACGTCAGCCAACTTGTTCGCCAAGAAATGGGACGACGCTGTGCAGATTCCAGAACTGGGCAGGCGCGGATTGGGCTTGAAATTGGGCAACTTCAAT
TCTTTTTGGACCTCTTCTTCATGGTTGACTTTCTTAGGCTTCCCCTTCACCCATGCATGGAAATTTGGGCTTGGATGGCTCATTTTAGGGCATTTTCCACCAAAAATCCA
CAAAGTGCTCCTTAG
Protein sequenceShow/hide protein sequence
MKEAGAKYDEKLMVFEMENRAQGFRAKQEDLWFSLVFRAFWGVQVESEAIFGMVGKLIQFPTTPRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSSTWEGQWVS
LEEDDVRWLHAIFRTKLVGGSGGGPEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLEIGQLQFFLDLFFMVDFLRLPLHPCMEIWAWMAHFRAFSTKNP
QSAP