; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011571 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011571
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold8:16426820..16439339
RNA-Seq ExpressionSpg011571
SyntenySpg011571
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]6.5e-2237.64Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +P+VVRF +E   + SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+QK K KKK+R+ K + EE +DF    + +TL
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKKGEASTSLVKPKVVKDEKCSNS
        A++FP RFL D Q E    V CH ++ ++++++P  SL      +D+   N +DL      T ++    + +   S+S
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKKGEASTSLVKPKVVKDEKCSNS

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-2238.38Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +PIVV+F +E  ++ S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+QK K KKK+R+ K V EE +DF  P + +T+
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSL---GTVAAVEDVNTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY
        A+ FP RFL D Q E  E +TCH ++  +++ +P+ SL   G    +   N  DL     E  T L+   +      S++P + Y
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSL---GTVAAVEDVNTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-2238.38Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +P+VV+F +E   +  QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+QK K KKK+++ K + EE +DF    + +TL
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY
        A +FP RFL D Q E  E V CH +D ++++ +P  SL      +D+   N  DL     E  T L+   +      S++P   Y
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY

KAA0057705.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.2e-2137.84Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +P+VV F ++  ++ SQEK   IE+++EGW +V RRKK+K +  +KESR +R+ +R+ K+QK K KKK+R+ K V EE +DF    + + L
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY
        A++FP RFL D Q E    V CH ++  K+  +P  SL      +D+   N  DL     E  T L+   +      S++P   Y
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY

KAA0063066.1 uncharacterized protein E6C27_scaffold468G001830 [Cucumis melo var. makuwa]7.2e-2128.53Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFG  +P+VV+F +E   + S+EK  SIE+++EGW +V RRKK+K +   K+S L        K+QK K KK +R+ K V EE++DF  P + +TL
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDL---------------------------------------------
         ++FP RF  D Q E    V CH ++  +++ +P  SL      +D+   N  DL                                             
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDL---------------------------------------------

Query:  ------------KK-------------------------------------GEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKDD
                    KK                                     GEASTS  K  ++ DEK SN PIL Y+PLSR KKGESPF +  + +K  
Subjt:  ------------KK-------------------------------------GEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKDD

Query:  LGNLALILSGLWTPV----HEALSFDLWNSLLPDIEVSRG
        +G++ +I     T +     + +  DL  ++LP  +   G
Subjt:  LGNLALILSGLWTPV----HEALSFDLWNSLLPDIEVSRG

TrEMBL top hitse value%identityAlignment
A0A5A7TY01 Ty3-gypsy retrotransposon protein6.3e-2338.38Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +PIVV+F +E  ++ S  K  SIE++NEGW +V RR K+K +  +KES  +R+ +R+ K+QK K KKK+R+ K V EE +DF  P + +T+
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSL---GTVAAVEDVNTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY
        A+ FP RFL D Q E  E +TCH ++  +++ +P+ SL   G    +   N  DL     E  T L+   +      S++P + Y
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSL---GTVAAVEDVNTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY

A0A5A7UVV7 Retrotransposon gag protein3.5e-2137.84Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +P+VV F ++  ++ SQEK   IE+++EGW +V RRKK+K +  +KESR +R+ +R+ K+QK K KKK+R+ K V EE +DF    + + L
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY
        A++FP RFL D Q E    V CH ++  K+  +P  SL      +D+   N  DL     E  T L+   +      S++P   Y
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY

A0A5A7V7Z6 Ty3-gypsy retrotransposon protein5.9e-2137.3Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +P+VVRF +E  ++ SQE    IE+++EGW +V RRKK+K +  +KE R +R+ +R  K+QK K KKK+R+ K + EE +DF    + +TL
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDL--KKGEASTSLVKPKVVKDEKCSNSPILRY
        A++FP RFL D Q E    V CH ++  +++ +   SL      +D+   N +DL     E  T L+   +      S+SP + Y
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDL--KKGEASTSLVKPKVVKDEKCSNSPILRY

A0A5D3BE72 Ty3-gypsy retrotransposon protein1.8e-2238.38Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +P+VV+F +E   +  QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+QK K KKK+++ K + EE +DF    + +TL
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY
        A +FP RFL D Q E  E V CH +D ++++ +P  SL      +D+   N  DL     E  T L+   +      S++P   Y
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKK--GEASTSLVKPKVVKDEKCSNSPILRY

A0A5D3BSG5 Uncharacterized protein3.2e-2237.64Show/hide
Query:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL
        ++ +QFGT +P+VVRF +E   + SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+QK K KKK+R+ K + EE +DF    + +TL
Subjt:  KAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCPPQPITL

Query:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKKGEASTSLVKPKVVKDEKCSNS
        A++FP RFL D Q E    V CH ++ ++++++P  SL      +D+   N +DL      T ++    + +   S+S
Subjt:  AEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDV---NTSDLKKGEASTSLVKPKVVKDEKCSNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTCATGATGGCTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCATTTATTCAATTTGGGACCCTTGATCCCAT
AGTGGTTCGATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATATTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAA
AGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATG
GAAGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTG
TCACATTGTGGACGTGGTGAAAGATGATGATGTCCCTGCTAGCTCCTTGGGAACAGTGGCAGCTGTTGAAGATGTGAATACCTCCGACCTGAAAAAGGGTGAAGCGTCTA
CAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAAAAGTGTTCAAACTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAA
TGTTCAGAAAGCATAAAGGATGACCTAGGCAACTTAGCCTTAATCCTGAGTGGATTATGGACTCCTGTCCATGAGGCATTGTCCTTTGATTTATGGAATTCACTCCTTCC
CGATATTGAGGTAAGTAGAGGTGTTCCCTTAAGTGGTGACTCCGGGTCTTGGACAATGGGCCCTACCCTCTCTATGGCACAAGAGGGATTTCTGTTTGTTGGTTGGACCT
CAAACAGGTTGTTCATTAGAGGAGCACTAGTACTTAAGGACCAAGAGGTAGCCCAGGGATATATTTCTGTGTCCACGGATATCGACCGTCAACAGCAAGTTAGCCCTTCA
CGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAACTCCCCAATTGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCG
GCGAATTGGCCACTCTCACCCGTACAAATCAAAGGACAATGCCTCATGGACAGGAGTCCATAATCCACTCAGGATTAAGGCCAAGTTGCCTAGGTCATCCTACCGCCTCT
CCGTTCGTCGCCCTTCCTTTGATCCTTCATTTACCATTCCTGAACCGTACCGAACGGAGTCGAATCTCAGTTCGGATCGGTTTGAGCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTCATGATGGCTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCATTTATTCAATTTGGGACCCTTGATCCCAT
AGTGGTTCGATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATATTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAA
AGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATG
GAAGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTG
TCACATTGTGGACGTGGTGAAAGATGATGATGTCCCTGCTAGCTCCTTGGGAACAGTGGCAGCTGTTGAAGATGTGAATACCTCCGACCTGAAAAAGGGTGAAGCGTCTA
CAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAAAAGTGTTCAAACTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAA
TGTTCAGAAAGCATAAAGGATGACCTAGGCAACTTAGCCTTAATCCTGAGTGGATTATGGACTCCTGTCCATGAGGCATTGTCCTTTGATTTATGGAATTCACTCCTTCC
CGATATTGAGGTAAGTAGAGGTGTTCCCTTAAGTGGTGACTCCGGGTCTTGGACAATGGGCCCTACCCTCTCTATGGCACAAGAGGGATTTCTGTTTGTTGGTTGGACCT
CAAACAGGTTGTTCATTAGAGGAGCACTAGTACTTAAGGACCAAGAGGTAGCCCAGGGATATATTTCTGTGTCCACGGATATCGACCGTCAACAGCAAGTTAGCCCTTCA
CGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAACTCCCCAATTGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCG
GCGAATTGGCCACTCTCACCCGTACAAATCAAAGGACAATGCCTCATGGACAGGAGTCCATAATCCACTCAGGATTAAGGCCAAGTTGCCTAGGTCATCCTACCGCCTCT
CCGTTCGTCGCCCTTCCTTTGATCCTTCATTTACCATTCCTGAACCGTACCGAACGGAGTCGAATCTCAGTTCGGATCGGTTTGAGCACTAG
Protein sequenceShow/hide protein sequence
MSVMMADIDQDERMAEMERKLNLLMKAFIQFGTLDPIVVRFQKEATMKGSQEKYISIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVM
EESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVKDDDVPASSLGTVAAVEDVNTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTE
CSESIKDDLGNLALILSGLWTPVHEALSFDLWNSLLPDIEVSRGVPLSGDSGSWTMGPTLSMAQEGFLFVGWTSNRLFIRGALVLKDQEVAQGYISVSTDIDRQQQVSPS
RVFVPQLGQITVLPLGYLLVLNSPIGLVPKMVGLLSRRIGHSHPYKSKDNASWTGVHNPLRIKAKLPRSSYRLSVRRPSFDPSFTIPEPYRTESNLSSDRFEH