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Spg011576 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011576
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold8:14766040..14775742
RNA-Seq ExpressionSpg011576
SyntenySpg011576
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]1.4e-3560.26Show/hide
Query:  ASSSKGKSPSSSST--PPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE
        ++SSKG  PSSSS   P PMSA QYTMDLGFT VT S++R  SI  GS  ESST PPRPS NL+ P G ++QMRP  S  S   SST  P++YSQAVT +
Subjt:  ASSSKGKSPSSSST--PPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE

Query:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTR
        KRFVPR EIK+YF+KS+V+ +PII+ E+Q L LEE VS ++P  FNF+PEDL+K +
Subjt:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]2.9e-3660.39Show/hide
Query:  ASSSKGK--SPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE
        ++SSKG   S SS+S P PMSADQY MDLGFT VT S++R   I  G   ESST PPRPSANL+ PFG +VQM+P  S  S   SST  P++YSQAVTP+
Subjt:  ASSSKGK--SPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE

Query:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQK
        KRFVPR +IK YF+KS+V+ +P I+LE+Q L LEE VS ++P  FNF+PEDL+K
Subjt:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.7e-4161.08Show/hide
Query:  ASSSKGKSP--SSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE
        ++SSKG  P  SS+S P P+SADQY MDLGFT VT   +RS  I  GS  ESST PPRPS NL+ P   +VQMRP  S  S   SST  P++YSQAVTP+
Subjt:  ASSSKGKSP--SSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE

Query:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTK
        KRFVPR EIK+YF+K +V+ +PII+LE+Q L  EETVS ++P  FNF+ EDL+KTR FYEFIL DTK
Subjt:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTK

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]1.1e-3559.74Show/hide
Query:  AKASSSKGKSPSSS--STPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVT
        A ++SS+G  PSSS  S P PMSADQY MDLGFT VT S+ARS  IQ GS  +SST PPR SANL+ P  E+VQMRP  S  S   SST  P++YSQ +T
Subjt:  AKASSSKGKSPSSS--STPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVT

Query:  PEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDL
        P+KRFVPRLEIK+YF+K +++ + II+ E+Q L LEETVS ++P  FNF+P+DL
Subjt:  PEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDL

TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.0e-3443.67Show/hide
Query:  PKGSHQSPASSSLRVILVSIRSHWYLAKASSSKGKSPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMR
        P    Q P ++     L   +S    +  + S+ + PS SS P PMSA+ Y MDL F  V+  +  S         +SS+ PP PS  L+ P G      
Subjt:  PKGSHQSPASSSLRVILVSIRSHWYLAKASSSKGKSPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMR

Query:  PHDSLDSRIGSSTSS-----PSSYSQAVTPEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTKSV
        P+    S   SS+ S     PSSYSQ V P K F PR  I  YF K+ ++ +  I+ EF G +++E  S ++P GFNF+PEDL KTRTFYE+ILVD+KS 
Subjt:  PHDSLDSRIGSSTSS-----PSSYSQAVTPEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTKSV

Query:  EITYIPDKNDPSKIAYSKLKIFKALNPTH
        EIT++PDKNDPSKI YSKL+IF+ L P++
Subjt:  EITYIPDKNDPSKIAYSKLKIFKALNPTH

TrEMBL top hitse value%identityAlignment
A0A5A7SQU5 Retrotransposable element Tf25.0e-3443.67Show/hide
Query:  PKGSHQSPASSSLRVILVSIRSHWYLAKASSSKGKSPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMR
        P    Q P ++     L   +S    +  + S+ + PS SS P PMSA+ Y MDL F  V+  +  S         +SS+ PP PS  L+ P G      
Subjt:  PKGSHQSPASSSLRVILVSIRSHWYLAKASSSKGKSPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMR

Query:  PHDSLDSRIGSSTSS-----PSSYSQAVTPEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTKSV
        P+    S   SS+ S     PSSYSQ V P K F PR  I  YF K+ ++ +  I+ EF G +++E  S ++P GFNF+PEDL KTRTFYE+ILVD+KS 
Subjt:  PHDSLDSRIGSSTSS-----PSSYSQAVTPEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTKSV

Query:  EITYIPDKNDPSKIAYSKLKIFKALNPTH
        EIT++PDKNDPSKI YSKL+IF+ L P++
Subjt:  EITYIPDKNDPSKIAYSKLKIFKALNPTH

A0A5A7TM80 Putative Retrotransposon protein3.2e-4161.08Show/hide
Query:  ASSSKGKSP--SSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE
        ++SSKG  P  SS+S P P+SADQY MDLGFT VT   +RS  I  GS  ESST PPRPS NL+ P   +VQMRP  S  S   SST  P++YSQAVTP+
Subjt:  ASSSKGKSP--SSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE

Query:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTK
        KRFVPR EIK+YF+K +V+ +PII+LE+Q L  EETVS ++P  FNF+ EDL+KTR FYEFIL DTK
Subjt:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTK

A0A5D3DX32 Retrotransposable element Tf22.9e-3443.67Show/hide
Query:  PKGSHQSPASSSLRVILVSIRSHWYLAKASSSKGKSPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMR
        P    Q P ++     L   +S    +  + S+ + PS SS P PMSA+ Y MDL F  V+  +  S         +SS+ PP PS  L+ P G      
Subjt:  PKGSHQSPASSSLRVILVSIRSHWYLAKASSSKGKSPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMR

Query:  PHDSLDSRIGSSTSS-----PSSYSQAVTPEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTKSV
        P+    S   SS+ S     PSSYSQ V P K F PR  I  YF K+ ++ +  I+ EF G +++E  S ++P GFNF+PEDL KTRTFYE+ILVD+KS 
Subjt:  PHDSLDSRIGSSTSS-----PSSYSQAVTPEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTKSV

Query:  EITYIPDKNDPSKIAYSKLKIFKALNPTH
        EIT++PDKNDPSKI YSKL+IF+ L P++
Subjt:  EITYIPDKNDPSKIAYSKLKIFKALNPTH

A0A5D3E4J4 Uncharacterized protein1.4e-3660.39Show/hide
Query:  ASSSKGK--SPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE
        ++SSKG   S SS+S P PMSADQY MDLGFT VT S++R   I  G   ESST PPRPSANL+ PFG +VQM+P  S  S   SST  P++YSQAVTP+
Subjt:  ASSSKGK--SPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE

Query:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQK
        KRFVPR +IK YF+KS+V+ +P I+LE+Q L LEE VS ++P  FNF+PEDL+K
Subjt:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQK

E5GCE6 Uncharacterized protein7.0e-3660.26Show/hide
Query:  ASSSKGKSPSSSST--PPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE
        ++SSKG  PSSSS   P PMSA QYTMDLGFT VT S++R  SI  GS  ESST PPRPS NL+ P G ++QMRP  S  S   SST  P++YSQAVT +
Subjt:  ASSSKGKSPSSSST--PPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPFGEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPE

Query:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTR
        KRFVPR EIK+YF+KS+V+ +PII+ E+Q L LEE VS ++P  FNF+PEDL+K +
Subjt:  KRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGGTTTCAGTATGAATTAACTTCGTTCATTGATTATCTAGAAATAAATTTACCAATTGAAAATCTAATCAGCTTAACTGGAAAAGCCAGCGGTTCCGTTCGTTG
GTTTGGTTTGATTCATGCACACCCTTACAACTCCAAACCTCTTCTATCAAAAGAGACCCTAGACAGCAGTGCTCCAAGTTATGATGACTTCATGAAAGGGAAAAATACAG
GAAAAGCTGGAATTCCCCAGAAATGCGGGAAGGCAAAATTGAAATGCGACCGCATTTCTGGAGAAACAGAGGCCATTTCGAGTCGTGCGCGGGTCGTTGTTGACGAGTCT
TCTTCGCACCTAACTGGTTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGCATAACGGTCTTCAAGCTTGGTTCCCACTCCTTGGCCTTGCTTCAGC
TCCCACAGAAGATGTAATGATCCAAAGCATCCATGTAGGTGACATGCGGGTGGGGGTATCCTATATTTGTAAGGGTGAAAGTGGCCAGTTCGCCGACTCAATAATCCTAC
CATTTCAGGGGCAAGACCGAATGGAGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGAAATATTCTACAGTGAGAAGAGTGCAGCTGACCCC
TGGGGTGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACCAGTCTCCTGCCTCTAGTAGTCTCAGAGTCATACTGGTGTCCAT
TAGGTCCCACTGGTACCTCGCTAAAGCCTCATCTTCAAAGGGCAAAAGCCCATCTTCATCCTCAACACCTCCTCCAATGAGTGCTGATCAATACACTATGGATTTAGGGT
TTACTCCAGTAACCTGTTCCAAAGCAAGGTCCGTCAGTATACAACCCGGATCGACCATGGAATCTTCTACTCCACCTCCAAGGCCTTCAGCCAATTTAGTCCATCCTTTT
GGCGAAATCGTTCAAATGAGACCTCATGACTCACTTGATTCAAGGATAGGGTCATCAACCTCATCACCCTCTTCATATTCTCAAGCAGTTACTCCTGAAAAAAGGTTTGT
ACCTCGTCTTGAAATCAAAACTTACTTTAAAAAATCACTGGTCATCAATGAACCAATCATAAAACTAGAATTCCAAGGTCTCAACCTTGAAGAGACCGTTTCAAACATGT
ACCCTCCAGGCTTCAACTTCATGCCTGAAGATCTGCAAAAAACTCGAACTTTCTATGAGTTTATTCTTGTTGACACCAAGTCAGTAGAAATAACTTATATTCCTGACAAA
AACGATCCTTCAAAAATTGCATATTCGAAGCTTAAAATATTCAAAGCCTTGAATCCAACCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGGTTTCAGTATGAATTAACTTCGTTCATTGATTATCTAGAAATAAATTTACCAATTGAAAATCTAATCAGCTTAACTGGAAAAGCCAGCGGTTCCGTTCGTTG
GTTTGGTTTGATTCATGCACACCCTTACAACTCCAAACCTCTTCTATCAAAAGAGACCCTAGACAGCAGTGCTCCAAGTTATGATGACTTCATGAAAGGGAAAAATACAG
GAAAAGCTGGAATTCCCCAGAAATGCGGGAAGGCAAAATTGAAATGCGACCGCATTTCTGGAGAAACAGAGGCCATTTCGAGTCGTGCGCGGGTCGTTGTTGACGAGTCT
TCTTCGCACCTAACTGGTTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGCATAACGGTCTTCAAGCTTGGTTCCCACTCCTTGGCCTTGCTTCAGC
TCCCACAGAAGATGTAATGATCCAAAGCATCCATGTAGGTGACATGCGGGTGGGGGTATCCTATATTTGTAAGGGTGAAAGTGGCCAGTTCGCCGACTCAATAATCCTAC
CATTTCAGGGGCAAGACCGAATGGAGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGAAATATTCTACAGTGAGAAGAGTGCAGCTGACCCC
TGGGGTGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACCAGTCTCCTGCCTCTAGTAGTCTCAGAGTCATACTGGTGTCCAT
TAGGTCCCACTGGTACCTCGCTAAAGCCTCATCTTCAAAGGGCAAAAGCCCATCTTCATCCTCAACACCTCCTCCAATGAGTGCTGATCAATACACTATGGATTTAGGGT
TTACTCCAGTAACCTGTTCCAAAGCAAGGTCCGTCAGTATACAACCCGGATCGACCATGGAATCTTCTACTCCACCTCCAAGGCCTTCAGCCAATTTAGTCCATCCTTTT
GGCGAAATCGTTCAAATGAGACCTCATGACTCACTTGATTCAAGGATAGGGTCATCAACCTCATCACCCTCTTCATATTCTCAAGCAGTTACTCCTGAAAAAAGGTTTGT
ACCTCGTCTTGAAATCAAAACTTACTTTAAAAAATCACTGGTCATCAATGAACCAATCATAAAACTAGAATTCCAAGGTCTCAACCTTGAAGAGACCGTTTCAAACATGT
ACCCTCCAGGCTTCAACTTCATGCCTGAAGATCTGCAAAAAACTCGAACTTTCTATGAGTTTATTCTTGTTGACACCAAGTCAGTAGAAATAACTTATATTCCTGACAAA
AACGATCCTTCAAAAATTGCATATTCGAAGCTTAAAATATTCAAAGCCTTGAATCCAACCCATTGA
Protein sequenceShow/hide protein sequence
MFGFQYELTSFIDYLEINLPIENLISLTGKASGSVRWFGLIHAHPYNSKPLLSKETLDSSAPSYDDFMKGKNTGKAGIPQKCGKAKLKCDRISGETEAISSRARVVVDES
SSHLTGCIRELSMSESSHRNVHNGLQAWFPLLGLASAPTEDVMIQSIHVGDMRVGVSYICKGESGQFADSIILPFQGQDRMEAGNITVQDGIHSFPYWEIFYSEKSAADP
WGGVKGIPFILLLSENSPKGSHQSPASSSLRVILVSIRSHWYLAKASSSKGKSPSSSSTPPPMSADQYTMDLGFTPVTCSKARSVSIQPGSTMESSTPPPRPSANLVHPF
GEIVQMRPHDSLDSRIGSSTSSPSSYSQAVTPEKRFVPRLEIKTYFKKSLVINEPIIKLEFQGLNLEETVSNMYPPGFNFMPEDLQKTRTFYEFILVDTKSVEITYIPDK
NDPSKIAYSKLKIFKALNPTH