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Spg011577 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011577
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:14333384..14337735
RNA-Seq ExpressionSpg011577
SyntenySpg011577
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1941.57Show/hide
Query:  LSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELP
        +S  E  + PRG+R  LQT E+ KT             PL TLSVL DNDAVVSAG+APLRQRRWEC   P    TS   ++        S  LVEIELP
Subjt:  LSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELP

Query:  VPDSQRLLKVPDQAPDGQWVSL-------------------------------EEDDVRWLHAIFRTKLAGGPGGGVT
        VPD         ++    W+ L                                 DDV WLHAIFR K AGGPGGGVT
Subjt:  VPDSQRLLKVPDQAPDGQWVSL-------------------------------EEDDVRWLHAIFRTKLAGGPGGGVT

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.5e-2651.33Show/hide
Query:  PRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVML----------VEIEL
        PRG+RS LQT EL KT +            L TLSVLRDNDAVVSAG     +       APLHRRTSKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVML----------VEIEL

Query:  PVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYM
         VPD+        ++       +  DDV WLH +FR K  GGPGG VTY+
Subjt:  PVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYM

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.5e-2651.33Show/hide
Query:  PRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVML----------VEIEL
        PRG+RS LQT EL KT +            L TLSVLRDNDAVVSAG     +       APLHRRTSKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVML----------VEIEL

Query:  PVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYM
         VPD+        ++       +  DDV WLH +FR K  GGPGG VTY+
Subjt:  PVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYM

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]3.0e-1465.15Show/hide
Query:  YRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVE
        YRVHT YI LLTLSVLRDN+ ++S  R PL +        PLHRRTSKRWLYWAC TQR  VMLV+
Subjt:  YRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVE

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1941.57Show/hide
Query:  LSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELP
        +S  E  + PRG+R  LQT E+ KT             PL TLSVL DNDAVVSAG+APLRQRRWEC   P    TS   ++        S  LVEIELP
Subjt:  LSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELP

Query:  VPDSQRLLKVPDQAPDGQWVSL-------------------------------EEDDVRWLHAIFRTKLAGGPGGGVT
        VPD         ++    W+ L                                 DDV WLHAIFR K AGGPGGGVT
Subjt:  VPDSQRLLKVPDQAPDGQWVSL-------------------------------EEDDVRWLHAIFRTKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase8.7e-2041.57Show/hide
Query:  LSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELP
        +S  E  + PRG+R  LQT E+ KT             PL TLSVL DNDAVVSAG+APLRQRRWEC   P    TS   ++        S  LVEIELP
Subjt:  LSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELP

Query:  VPDSQRLLKVPDQAPDGQWVSL-------------------------------EEDDVRWLHAIFRTKLAGGPGGGVT
        VPD         ++    W+ L                                 DDV WLHAIFR K AGGPGGGVT
Subjt:  VPDSQRLLKVPDQAPDGQWVSL-------------------------------EEDDVRWLHAIFRTKLAGGPGGGVT

A0A5A7VGQ5 Uncharacterized protein7.3e-2751.33Show/hide
Query:  PRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVML----------VEIEL
        PRG+RS LQT EL KT +            L TLSVLRDNDAVVSAG     +       APLHRRTSKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVML----------VEIEL

Query:  PVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYM
         VPD+        ++       +  DDV WLH +FR K  GGPGG VTY+
Subjt:  PVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYM

A0A5D3BG85 Uncharacterized protein7.3e-2751.33Show/hide
Query:  PRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVML----------VEIEL
        PRG+RS LQT EL KT +            L TLSVLRDNDAVVSAG     +       APLHRRTSKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVML----------VEIEL

Query:  PVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYM
         VPD+        ++       +  DDV WLH +FR K  GGPGG VTY+
Subjt:  PVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYM

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein1.4e-1465.15Show/hide
Query:  YRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVE
        YRVHT YI LLTLSVLRDN+ ++S  R PL +        PLHRRTSKRWLYWAC TQR  VMLV+
Subjt:  YRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVE

A0A5D3BTP3 Reverse transcriptase8.7e-2041.57Show/hide
Query:  LSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELP
        +S  E  + PRG+R  LQT E+ KT             PL TLSVL DNDAVVSAG+APLRQRRWEC   P    TS   ++        S  LVEIELP
Subjt:  LSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELP

Query:  VPDSQRLLKVPDQAPDGQWVSL-------------------------------EEDDVRWLHAIFRTKLAGGPGGGVT
        VPD         ++    W+ L                                 DDV WLHAIFR K AGGPGGGVT
Subjt:  VPDSQRLLKVPDQAPDGQWVSL-------------------------------EEDDVRWLHAIFRTKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCGCATTTCATTTTGCCTTCCCAGAAATGCGGTCGCATTTCTGGGCAAATTCCAGCTTTTCCTCTGAAGAAGAAGAAGAAGAATTTCGGGGTTTTGAGGTTGAA
GAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGGTTTTTATTCGGTTTGAGCTACCCAGAAGGAACTAAGAGGCCAA
GAGGAGATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTCCCAAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGT
GACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGC
GTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATAGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGATGGTCAATGGGTAT
CGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATACATGGAAATTAGTTCCTTAGCGAGTTGT
GACCTAAATCGCAACCCGAGCTATTTAAATAGCGAGGTGGTGTCGAGACGCCGTGGCCAGCGTCTCGACACCGACGGTGTTTCAGCCGGTCCTTCGAATCCGAAGCGTTG
A
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCGCATTTCATTTTGCCTTCCCAGAAATGCGGTCGCATTTCTGGGCAAATTCCAGCTTTTCCTCTGAAGAAGAAGAAGAAGAATTTCGGGGTTTTGAGGTTGAA
GAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGGTTTTTATTCGGTTTGAGCTACCCAGAAGGAACTAAGAGGCCAA
GAGGAGATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTCCCAAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGT
GACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGC
GTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATAGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGATGGTCAATGGGTAT
CGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATACATGGAAATTAGTTCCTTAGCGAGTTGT
GACCTAAATCGCAACCCGAGCTATTTAAATAGCGAGGTGGTGTCGAGACGCCGTGGCCAGCGTCTCGACACCGACGGTGTTTCAGCCGGTCCTTCGAATCCGAAGCGTTG
A
Protein sequenceShow/hide protein sequence
MWSHFILPSQKCGRISGQIPAFPLKKKKKNFGVLRLKKIGKAHAKPAIAESEFNLSTSGFLFGLSYPEGTKRPRGDRSGLQTRELAKTPKAIWYRVHTGYIPLLTLSVLR
DNDAVVSAGRAPLRQRRWECWAAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDSQRLLKVPDQAPDGQWVSLEEDDVRWLHAIFRTKLAGGPGGGVTYMEISSLASC
DLNRNPSYLNSEVVSRRRGQRLDTDGVSAGPSNPKR