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Spg011580 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011580
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:12806523..12811685
RNA-Seq ExpressionSpg011580
SyntenySpg011580
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050698.1 hypothetical protein E6C27_scaffold673G001870 [Cucumis melo var. makuwa]2.2e-0467.57Show/hide
Query:  ETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTK
        ET GYVDTCP+PTYY HFP   VIDP K+F KG  T+
Subjt:  ETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTK

KAA0054231.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-0556.36Show/hide
Query:  GVQGVPNPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYVDTCPAPTYYGHFP
        GV+GVPN +I PSEG V PK T R+II +S CD   E  G V T P+PTYY   P
Subjt:  GVQGVPNPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYVDTCPAPTYYGHFP

TYK07738.1 hypothetical protein E5676_scaffold1737G00070 [Cucumis melo var. makuwa]2.2e-0467.57Show/hide
Query:  ETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTK
        ET GYVDTCP+PTYY HFP   VIDP K+F KG  T+
Subjt:  ETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTK

TYK18639.1 hypothetical protein E5676_scaffold119G001810 [Cucumis melo var. makuwa]4.9e-0464.29Show/hide
Query:  GVQGVPNPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYV
        GV+GVPNP+I PSEG VAP  T RRII +S CDL  ET G +
Subjt:  GVQGVPNPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYV

TrEMBL top hitse value%identityAlignment
A0A5A7U5Z4 Uncharacterized protein1.1e-0467.57Show/hide
Query:  ETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTK
        ET GYVDTCP+PTYY HFP   VIDP K+F KG  T+
Subjt:  ETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTK

A0A5A7UL17 Reverse transcriptase7.3e-0656.36Show/hide
Query:  GVQGVPNPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYVDTCPAPTYYGHFP
        GV+GVPN +I PSEG V PK T R+II +S CD   E  G V T P+PTYY   P
Subjt:  GVQGVPNPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYVDTCPAPTYYGHFP

A0A5D3C990 Uncharacterized protein1.1e-0467.57Show/hide
Query:  ETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTK
        ET GYVDTCP+PTYY HFP   VIDP K+F KG  T+
Subjt:  ETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTK

A0A5D3D526 Uncharacterized protein2.4e-0464.29Show/hide
Query:  GVQGVPNPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYV
        GV+GVPNP+I PSEG VAP  T RRII +S CDL  ET G +
Subjt:  GVQGVPNPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACCCATGGTTTGCCATTGCATGAAAGGTTTACCTAGGGAAGAAAACAGAGGAAAAGCTGGAATTTCCCAGAAATGCGACCGCATTTCTGGAAAAACTGAAGCCGT
TCCGAGTCATCTGCGGGTCGTTGTTGACGAGTCTTCTTCGAACCTAACTAGCTGTTTTGACCCGAAATTGACTGGGCAACCTTCCAACACCTATTTCGCAGCTCCTCAAC
CATTTTCTACACTATATAAGCTCGAGATTCGAAACTTTGCATGCTATGTGAGTTTGATTTCGAAAGGGACAAACGATATCGGTTCTCATACAGGAGTTCAAGGTGTTCCG
AATCCTATGATCGGGCCCTCCGAAGGGATGGTTGCTCCAAAGACAACACGCAGGCGGATCATAAGGCTCTCACTGTGTGACCTATGGGTGGAGACCGAGGGATACGTTGA
CACGTGTCCCGCTCCCACTTACTATGGGCACTTTCCCCATTCACCTGTTATTGACCCATGCAAACACTTTCCGAAGGGAGGCCGCACTAAAACGACACGAACTCAGGTTC
TGGGTCTGTCCCAGATCTTCGCTTCGCGAAATCGCGATAGCGTCGAGACGCTGTTACGTTTGGAGGCAGATTCTGGGAATTCCAGCGGCTGTTCTTCACGTTTGGCCTCG
AATTTGGACGTGATTTTCATCGATCTTCATCATAGAATACCCTATTCTAGACCCGAACTTACAAAGGATAATCGATTTACAAATTATGCCCAAAAACGCAGGGGCCTTTA
CATTGAACCATTCAAGAAAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACCCATGGTTTGCCATTGCATGAAAGGTTTACCTAGGGAAGAAAACAGAGGAAAAGCTGGAATTTCCCAGAAATGCGACCGCATTTCTGGAAAAACTGAAGCCGT
TCCGAGTCATCTGCGGGTCGTTGTTGACGAGTCTTCTTCGAACCTAACTAGCTGTTTTGACCCGAAATTGACTGGGCAACCTTCCAACACCTATTTCGCAGCTCCTCAAC
CATTTTCTACACTATATAAGCTCGAGATTCGAAACTTTGCATGCTATGTGAGTTTGATTTCGAAAGGGACAAACGATATCGGTTCTCATACAGGAGTTCAAGGTGTTCCG
AATCCTATGATCGGGCCCTCCGAAGGGATGGTTGCTCCAAAGACAACACGCAGGCGGATCATAAGGCTCTCACTGTGTGACCTATGGGTGGAGACCGAGGGATACGTTGA
CACGTGTCCCGCTCCCACTTACTATGGGCACTTTCCCCATTCACCTGTTATTGACCCATGCAAACACTTTCCGAAGGGAGGCCGCACTAAAACGACACGAACTCAGGTTC
TGGGTCTGTCCCAGATCTTCGCTTCGCGAAATCGCGATAGCGTCGAGACGCTGTTACGTTTGGAGGCAGATTCTGGGAATTCCAGCGGCTGTTCTTCACGTTTGGCCTCG
AATTTGGACGTGATTTTCATCGATCTTCATCATAGAATACCCTATTCTAGACCCGAACTTACAAAGGATAATCGATTTACAAATTATGCCCAAAAACGCAGGGGCCTTTA
CATTGAACCATTCAAGAAAATGTAA
Protein sequenceShow/hide protein sequence
MTPMVCHCMKGLPREENRGKAGISQKCDRISGKTEAVPSHLRVVVDESSSNLTSCFDPKLTGQPSNTYFAAPQPFSTLYKLEIRNFACYVSLISKGTNDIGSHTGVQGVP
NPMIGPSEGMVAPKTTRRRIIRLSLCDLWVETEGYVDTCPAPTYYGHFPHSPVIDPCKHFPKGGRTKTTRTQVLGLSQIFASRNRDSVETLLRLEADSGNSSGCSSRLAS
NLDVIFIDLHHRIPYSRPELTKDNRFTNYAQKRRGLYIEPFKKM