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Spg011588 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011588
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold8:15008047..15011256
RNA-Seq ExpressionSpg011588
SyntenySpg011588
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.1e-1264.91Show/hide
Query:  ERIFHIFRTRHGDCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        E +  + + R  DCPLIC GESGQ  DSI L F GQDR+GSWEHN TRWN LLP FR
Subjt:  ERIFHIFRTRHGDCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]8.3e-1364.29Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
        DCPLI   ESGQ ADS+ L FWGQDRV SWEHN TRWNSLLP FRE  +  + + +
Subjt:  DCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR

KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-0681.25Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRVGSWEH
        DCPLIC GESGQ ADSI L FWGQDRVG W+H
Subjt:  DCPLICMGESGQYADSISLPFWGQDRVGSWEH

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-1376.09Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
        DCPL C GESGQ  DSI L FWGQDRVGSWEHN TRWNS +P FR+
Subjt:  DCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE

TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-0681.25Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRVGSWEH
        DCPLIC GESGQ ADSI L FWGQDRVG W+H
Subjt:  DCPLICMGESGQYADSISLPFWGQDRVGSWEH

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein5.3e-1364.91Show/hide
Query:  ERIFHIFRTRHGDCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        E +  + + R  DCPLIC GESGQ  DSI L F GQDR+GSWEHN TRWN LLP FR
Subjt:  ERIFHIFRTRHGDCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFR

A0A5A7U202 Reverse transcriptase9.6e-0781.25Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRVGSWEH
        DCPLIC GESGQ ADSI L FWGQDRVG W+H
Subjt:  DCPLICMGESGQYADSISLPFWGQDRVGSWEH

A0A5A7U2P4 Integrase catalytic domain-containing protein4.0e-1364.29Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
        DCPLI   ESGQ ADS+ L FWGQDRV SWEHN TRWNSLLP FRE  +  + + +
Subjt:  DCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR

A0A5D3C3J6 Gag/pol protein1.8e-1376.09Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
        DCPL C GESGQ  DSI L FWGQDRVGSWEHN TRWNS +P FR+
Subjt:  DCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE

A0A5D3CBX3 Reverse transcriptase9.6e-0781.25Show/hide
Query:  DCPLICMGESGQYADSISLPFWGQDRVGSWEH
        DCPLIC GESGQ ADSI L FWGQDRVG W+H
Subjt:  DCPLICMGESGQYADSISLPFWGQDRVGSWEH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCAGAAGATCATGCGAATCTCAGAATTTTGTCGGAAAGCCCAGTTGCGACCGCAAAGTCGGGCGCAATTCTTCTGTGCACTTCCTTGACACTTCTATTTTCAGC
TGGGGCTACTTTCCTTATTGATTTGCGGGCGCATTTCGAACGCATCTTTCACATCTTCAGGACCAGACATGGAGATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAAT
ACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAG
TCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATGTCCGTGGACACAGAAAATATGTCTACAGTGAGAAGAGTGCAACTGTCTATTAGGTCCCA
CTGCGATTATAAGAGAAGGAGGCTGCTGCGTTTTCGATCGTTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGATTCTGCCTCCAGACGCAACAGCGTCGG
GACGCTACTCCAACAGCGTCTCGACGCTGTCTCGATACCACAGGCGCTCATATAAGGAAAGCGGACAGCGTCGGGACGCTGCGATTATAGCGTCTCGACGCTGTCACGAT
GGCGGCGCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCCAGAAGATCATGCGAATCTCAGAATTTTGTCGGAAAGCCCAGTTGCGACCGCAAAGTCGGGCGCAATTCTTCTGTGCACTTCCTTGACACTTCTATTTTCAGC
TGGGGCTACTTTCCTTATTGATTTGCGGGCGCATTTCGAACGCATCTTTCACATCTTCAGGACCAGACATGGAGATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAAT
ACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAG
TCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATGTCCGTGGACACAGAAAATATGTCTACAGTGAGAAGAGTGCAACTGTCTATTAGGTCCCA
CTGCGATTATAAGAGAAGGAGGCTGCTGCGTTTTCGATCGTTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGATTCTGCCTCCAGACGCAACAGCGTCGG
GACGCTACTCCAACAGCGTCTCGACGCTGTCTCGATACCACAGGCGCTCATATAAGGAAAGCGGACAGCGTCGGGACGCTGCGATTATAGCGTCTCGACGCTGTCACGAT
GGCGGCGCTCGTTAG
Protein sequenceShow/hide protein sequence
MIPEDHANLRILSESPVATAKSGAILLCTSLTLLFSAGATFLIDLRAHFERIFHIFRTRHGDCPLICMGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADE
SGVTDTREGLTSRYWSMSVDTENMSTVRRVQLSIRSHCDYKRRRLLRFRSLERRWRRTVKSTTKILPPDATASGRYSNSVSTLSRYHRRSYKESGQRRDAAIIASRRCHD
GGAR