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Spg011653 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011653
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description2-succinylbenzoate--CoA ligase
Genome locationscaffold1:1015634..1018254
RNA-Seq ExpressionSpg011653
SyntenySpg011653
Gene Ontology termsGO:0006631 - fatty acid metabolic process (biological process)
GO:0042372 - phylloquinone biosynthetic process (biological process)
GO:0005777 - peroxisome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0031956 - medium-chain fatty acid-CoA ligase activity (molecular function)
InterPro domainsIPR025110 - AMP-binding enzyme, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439548.1 PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform X2 [Cucumis melo]5.9e-5081.9Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VERILLQHPGVKGCVVVGIPD RLTEK VACVQ+E+ WQWYET HEL+ GK++QHISSAILR+HC +CNLTGFKVPKEF+KWGKPFPVTT+GKLKRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        VR EVISQ +LLRSTL
Subjt:  VRKEVISQFQLLRSTL

XP_023544286.1 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform X2 [Cucurbita pepo subsp. pepo]6.6e-4980.17Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VERILLQHPGVKGC VVGIPD RLTEK VACVQ+EE WQW+ET  EL+ GKI+QH+S+AILRKHCK+CNLTGFK+PKEF KWGKPFPVTT GKLKRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        +R EVISQF LLRSTL
Subjt:  VRKEVISQFQLLRSTL

XP_038882140.1 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform X4 [Benincasa hispida]2.7e-5084.35Show/hide
Query:  QVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTV
        +VERILLQHPGVKGCVVVGIPD RLTEK VACVQ+EE WQWYET HEL H KI+QH+SS IL KHCKEC LTGFKVPKEF+KWGKPFPVTT+GKLKRD V
Subjt:  QVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTV

Query:  RKEVISQFQLLRSTL
        R EVISQF+LLRSTL
Subjt:  RKEVISQFQLLRSTL

XP_038882141.1 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform X5 [Benincasa hispida]2.0e-5083.62Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VERILLQHPGVKGCVVVGIPD RLTEK VACVQ+EE WQWYET HEL H KI+QH+SS IL KHCKEC LTGFKVPKEF+KWGKPFPVTT+GKLKRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        VR EVISQF+LLRSTL
Subjt:  VRKEVISQFQLLRSTL

XP_038882142.1 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform X6 [Benincasa hispida]2.0e-5083.62Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VERILLQHPGVKGCVVVGIPD RLTEK VACVQ+EE WQWYET HEL H KI+QH+SS IL KHCKEC LTGFKVPKEF+KWGKPFPVTT+GKLKRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        VR EVISQF+LLRSTL
Subjt:  VRKEVISQFQLLRSTL

TrEMBL top hitse value%identityAlignment
A0A1S3AYL3 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform X22.9e-5081.9Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VERILLQHPGVKGCVVVGIPD RLTEK VACVQ+E+ WQWYET HEL+ GK++QHISSAILR+HC +CNLTGFKVPKEF+KWGKPFPVTT+GKLKRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        VR EVISQ +LLRSTL
Subjt:  VRKEVISQFQLLRSTL

A0A5A7UDB3 2-succinylbenzoate--CoA ligase2.1e-4581.73Show/hide
Query:  VERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTVR
        VERILLQHPGVKGCVVVGIPD RLTEK VACVQ+E+ WQWYET HEL+ GK++QHISSAILR+HC +CNLTGFKVPKEF+KWGKPFPVTT+GKLKRD VR
Subjt:  VERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTVR

Query:  KEVI
         E++
Subjt:  KEVI

A0A5D3CSF4 2-succinylbenzoate--CoA ligase7.3e-4680.19Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VERILLQHPGVKGCVVVGIPD RLTEK VACVQ+E+ WQWYET HEL+ GK++QHISSAILR+HC +CNLTGFKVPKEF+KWGKPFPVTT+GKLKRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVI
        VR E++
Subjt:  VRKEVI

A0A6J1EDP2 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform X33.0e-4777.59Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VERILLQHPGVKGC VV IPD RLTEK VACVQ+EE WQW+ET  EL+ GKI+QH+ +AILRKHC +CNLTGFK+PKEF KWGKPFPVTT GKLKRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        +R EVISQF LLRSTL
Subjt:  VRKEVISQFQLLRSTL

A0A6J1ISN9 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform X42.7e-4878.45Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++V+RILLQHPGVKGC VVGIPD RLTEK VACVQ+EE WQW+ET  EL+ GKI+ H+S+AILRKHCK+CNLTGFK+PKEF+KWGKPFPVTT GKLKRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        +R EVISQF LLRSTL
Subjt:  VRKEVISQFQLLRSTL

SwissProt top hitse value%identityAlignment
A4YDR9 4-hydroxybutyrate--CoA ligase 21.0e-0434.31Show/hide
Query:  VERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTVR
        VE+ L++ PGVK   V G PD +  E V A ++++EG +   T  E+I              K CKE  L  F+ PK  +++G P P+T  GK+++  +R
Subjt:  VERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTVR

Query:  KE
         E
Subjt:  KE

Q0P4F7 Medium-chain acyl-CoA ligase ACSF2, mitochondrial4.6e-0525.45Show/hide
Query:  QVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTV
        ++E+ L  HP +    VVG+ D R+ E+V AC++++EG                Q  +   ++ +CK   +  +KVP+ ++ + + +P+T  GK+++  +
Subjt:  QVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTV

Query:  RKEVISQFQL
        R+    Q  L
Subjt:  RKEVISQFQL

Q58DN7 Malonate--CoA ligase ACSF3, mitochondrial3.9e-0430.1Show/hide
Query:  QVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKL-KRDT
        +VER+LL HP +    V+G+PD    ++V A V ++EG       H L H ++++               L  + VP E +   +  P   +GK+ KRD 
Subjt:  QVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKL-KRDT

Query:  VRK
        VR+
Subjt:  VRK

Q8VCW8 Medium-chain acyl-CoA ligase ACSF2, mitochondrial3.0e-0422.73Show/hide
Query:  QVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTV
        ++E   L+HP V+   VVG+ D R+ E++ AC++++ G                +  ++  ++  CK   ++ FK+P+ ++ + + +P+T  GK+++  +
Subjt:  QVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTV

Query:  RKEVISQFQL
        R+++    +L
Subjt:  RKEVISQFQL

Q8VYJ1 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal5.6e-2747.41Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VE +L++HPG+   VV+G+ D RL E VVACV+++E W W +  +     K    +SS  L+ HC+  NLTGFK+PK F++W K FP+TT GK+KRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        VR++V+S FQ++ S+L
Subjt:  VRKEVISQFQLLRSTL

Arabidopsis top hitse value%identityAlignment
AT1G30520.1 acyl-activating enzyme 144.0e-2847.41Show/hide
Query:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT
        ++VE +L++HPG+   VV+G+ D RL E VVACV+++E W W +  +     K    +SS  L+ HC+  NLTGFK+PK F++W K FP+TT GK+KRD 
Subjt:  KQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDT

Query:  VRKEVISQFQLLRSTL
        VR++V+S FQ++ S+L
Subjt:  VRKEVISQFQLLRSTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCTAAGAAGCAAGTGGAGAGAATTCTATTGCAACATCCGGGAGTTAAAGGCTGCGTTGTGGTGGGCATTCCTGATCCTCGTTTGACAGAGAAGGTTGTAGCTTG
TGTTCAAGTAGAAGAGGGCTGGCAGTGGTATGAAACCTATCATGAACTTATTCATGGAAAGATTGAGCAGCATATATCTAGTGCAATTCTTCGTAAACATTGCAAGGAGT
GTAACTTAACAGGGTTCAAAGTACCTAAGGAGTTTATGAAGTGGGGGAAGCCATTTCCAGTGACTACAATAGGAAAATTGAAAAGAGACACAGTTCGAAAGGAGGTAATA
TCTCAGTTTCAGTTACTGCGTAGCACTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCTAAGAAGCAAGTGGAGAGAATTCTATTGCAACATCCGGGAGTTAAAGGCTGCGTTGTGGTGGGCATTCCTGATCCTCGTTTGACAGAGAAGGTTGTAGCTTG
TGTTCAAGTAGAAGAGGGCTGGCAGTGGTATGAAACCTATCATGAACTTATTCATGGAAAGATTGAGCAGCATATATCTAGTGCAATTCTTCGTAAACATTGCAAGGAGT
GTAACTTAACAGGGTTCAAAGTACCTAAGGAGTTTATGAAGTGGGGGAAGCCATTTCCAGTGACTACAATAGGAAAATTGAAAAGAGACACAGTTCGAAAGGAGGTAATA
TCTCAGTTTCAGTTACTGCGTAGCACTCTCTGA
Protein sequenceShow/hide protein sequence
MPPKKQVERILLQHPGVKGCVVVGIPDPRLTEKVVACVQVEEGWQWYETYHELIHGKIEQHISSAILRKHCKECNLTGFKVPKEFMKWGKPFPVTTIGKLKRDTVRKEVI
SQFQLLRSTL