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Spg011660 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011660
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:2874006..2874470
RNA-Seq ExpressionSpg011660
SyntenySpg011660
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010693676.1 PREDICTED: uncharacterized protein LOC104906600 [Beta vulgaris subsp. vulgaris]8.0e-0739.18Show/hide
Query:  MAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDVIRRKASF---FTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFP
        MAEL  I+EGL  A+R G+ ++L+ SD LQAINLIS  +++ N+   +V+++  +    F DIQF++ +R  N VAD +A+  R + ++   V   P
Subjt:  MAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDVIRRKASF---FTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFP

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.0e-0936.03Show/hide
Query:  LVLELSAEMMSATLLEPPRFYEELDYPPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVR--NETLVDVIRRKASFFTDIQFSYSQRNS
        ++ + S  +++AT +  P         P +AE+R ILEGL FA    + H+ VESD L AI LI  E   R   +  V  I+     F  I FS+S R  
Subjt:  LVLELSAEMMSATLLEPPRFYEELDYPPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVR--NETLVDVIRRKASFFTDIQFSYSQRNS

Query:  NLVADAIAKWARVE-RKSYEWVHFFPEWLCTLVFND
        N  A  +AKW       +Y W+  FP WL  LV  D
Subjt:  NLVADAIAKWARVE-RKSYEWVHFFPEWLCTLVFND

XP_026434339.1 uncharacterized protein LOC113331914 [Papaver somniferum]1.0e-0628.18Show/hide
Query:  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDVIRRKASFFTDIQF---SYSQRNSNLVADAIAKWARVERKSYEWVHFFPE
        P  AE +A+LE +++A+++G   + +E DCL  I++++        T  ++I+      +   F   +Y  R++N +AD++AK+AR +   +++ + FP 
Subjt:  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDVIRRKASFFTDIQF---SYSQRNSNLVADAIAKWARVERKSYEWVHFFPE

Query:  WLCTLVFNDQ
        W+ TL+  D+
Subjt:  WLCTLVFNDQ

XP_027064446.1 uncharacterized protein LOC113690648 [Coffea arabica]5.5e-0833.03Show/hide
Query:  PRMAELRAILEGLIFAERRGYMHILVESDC---LQAINLISMEEEVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPE
        P + E + I + L  A+++G+  +L++SDC   +  IN    E+      L D+++ +   FT+  FS+ +R  N VA  +AK+A      +EW  FFP+
Subjt:  PRMAELRAILEGLIFAERRGYMHILVESDC---LQAINLISMEEEVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPE

Query:  WLCTLVFND
        WL +L  ND
Subjt:  WLCTLVFND

XP_027101192.1 uncharacterized protein LOC113720678 [Coffea arabica]1.6e-0736.45Show/hide
Query:  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEE-EVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWL
        P+M E  A+   ++ A+++G+  +  ESDC   I+ I+ EE +V   T++  I+R    F +  FS+++R SN V+  IAK+A    K+ EW   FP WL
Subjt:  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEE-EVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWL

Query:  CTLVFND
          LV  D
Subjt:  CTLVFND

TrEMBL top hitse value%identityAlignment
A0A2P6R2K8 Putative ribonuclease H-like domain-containing protein1.1e-0637.27Show/hide
Query:  PPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDV--IRRKASFFTDIQFSYSQRNSNLVADAIAKW-ARVERKSYEWVHFFP
        PPR AEL AI  GL FA  +G+  ++VE DCL+ +NL+S EEE  +E  V    ++R    F   +  +  R  N  A  +A+  ARVE + + W+   P
Subjt:  PPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDV--IRRKASFFTDIQFSYSQRNSNLVADAIAKW-ARVERKSYEWVHFFP

Query:  EWLCTLVFND
         WL  ++ +D
Subjt:  EWLCTLVFND

A0A6J1DX30 uncharacterized protein LOC1110248744.9e-1036.03Show/hide
Query:  LVLELSAEMMSATLLEPPRFYEELDYPPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVR--NETLVDVIRRKASFFTDIQFSYSQRNS
        ++ + S  +++AT +  P         P +AE+R ILEGL FA    + H+ VESD L AI LI  E   R   +  V  I+     F  I FS+S R  
Subjt:  LVLELSAEMMSATLLEPPRFYEELDYPPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVR--NETLVDVIRRKASFFTDIQFSYSQRNS

Query:  NLVADAIAKWARVE-RKSYEWVHFFPEWLCTLVFND
        N  A  +AKW       +Y W+  FP WL  LV  D
Subjt:  NLVADAIAKWARVE-RKSYEWVHFFPEWLCTLVFND

A0A6P6SF66 uncharacterized protein LOC1136906482.7e-0833.03Show/hide
Query:  PRMAELRAILEGLIFAERRGYMHILVESDC---LQAINLISMEEEVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPE
        P + E + I + L  A+++G+  +L++SDC   +  IN    E+      L D+++ +   FT+  FS+ +R  N VA  +AK+A      +EW  FFP+
Subjt:  PRMAELRAILEGLIFAERRGYMHILVESDC---LQAINLISMEEEVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPE

Query:  WLCTLVFND
        WL +L  ND
Subjt:  WLCTLVFND

A0A6P6SJS0 uncharacterized protein LOC1136921521.5e-0633.03Show/hide
Query:  PRMAELRAILEGLIFAERRGYMHILVESD---CLQAINLISMEEEVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPE
        P + E  AI + L  A+++G+  +L++SD    +  IN    E+      L D+++ +   FT+  FS+ +R  N VA  +AK+A      +EW   FPE
Subjt:  PRMAELRAILEGLIFAERRGYMHILVESD---CLQAINLISMEEEVRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPE

Query:  WLCTLVFND
        WL +L  ND
Subjt:  WLCTLVFND

J7G0Q7 Non-ltr retroelement reverse transcriptase4.3e-0633.64Show/hide
Query:  MAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEE--VRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLC
        +AEL AI  GL     R   +I+VESDCL+AI+L++ +E        LV+ I+   +        + +R  N  A AIAK+       Y W+   P+WL 
Subjt:  MAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEE--VRNETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWLC

Query:  TLVFNDQISA
        +L+ +D+  A
Subjt:  TLVFNDQISA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.9e-0733.64Show/hide
Query:  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRN-ETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWL
        P  AE +A+L  L     RGY+ +++E DC    NL+S      +   L+D IR  A  F+++QFS+ +R  N VA  +AK        Y      P WL
Subjt:  PRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRN-ETLVDVIRRKASFFTDIQFSYSQRNSNLVADAIAKWARVERKSYEWVHFFPEWL

Query:  CTLVFND
             ND
Subjt:  CTLVFND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATGTGGCCTGGAAATTGGGCTTCCCTGACACTGGTATTGGAGTTGTCTGCAGAAATGATGTCGGCAACATTACTGGAGCCTCCGCGATTTTATGAAGAACTTGA
TTATCCTCCCCGGATGGCTGAGTTGAGGGCGATTTTGGAGGGCTTGATCTTTGCGGAAAGGAGGGGTTACATGCATATTCTGGTTGAATCTGATTGCCTCCAGGCTATCA
ATTTGATCTCCATGGAAGAAGAAGTCAGGAACGAGACTTTAGTTGATGTTATTAGAAGGAAAGCTTCTTTTTTCACTGATATTCAATTTTCATATAGCCAGCGTAATTCC
AACTTGGTAGCTGATGCTATTGCCAAATGGGCTAGAGTGGAAAGGAAGAGTTATGAGTGGGTCCATTTTTTTCCTGAGTGGCTTTGTACGTTGGTCTTTAATGACCAGAT
TTCTGCTGCCCAAGTGACATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGATGTGGCCTGGAAATTGGGCTTCCCTGACACTGGTATTGGAGTTGTCTGCAGAAATGATGTCGGCAACATTACTGGAGCCTCCGCGATTTTATGAAGAACTTGA
TTATCCTCCCCGGATGGCTGAGTTGAGGGCGATTTTGGAGGGCTTGATCTTTGCGGAAAGGAGGGGTTACATGCATATTCTGGTTGAATCTGATTGCCTCCAGGCTATCA
ATTTGATCTCCATGGAAGAAGAAGTCAGGAACGAGACTTTAGTTGATGTTATTAGAAGGAAAGCTTCTTTTTTCACTGATATTCAATTTTCATATAGCCAGCGTAATTCC
AACTTGGTAGCTGATGCTATTGCCAAATGGGCTAGAGTGGAAAGGAAGAGTTATGAGTGGGTCCATTTTTTTCCTGAGTGGCTTTGTACGTTGGTCTTTAATGACCAGAT
TTCTGCTGCCCAAGTGACATTTTAA
Protein sequenceShow/hide protein sequence
MLMWPGNWASLTLVLELSAEMMSATLLEPPRFYEELDYPPRMAELRAILEGLIFAERRGYMHILVESDCLQAINLISMEEEVRNETLVDVIRRKASFFTDIQFSYSQRNS
NLVADAIAKWARVERKSYEWVHFFPEWLCTLVFNDQISAAQVTF