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Spg011684 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011684
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold1:413610..414116
RNA-Seq ExpressionSpg011684
SyntenySpg011684
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.1e-1638.13Show/hide
Query:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGE
        +WKPP  N WKLN++A+W  D + GG+GW +RD    +I A CR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+ + +
Subjt:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGE

Query:  DLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA
        D TEI  +++EI  +     + S    SR  N+  H LA
Subjt:  DLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.0e-1141Show/hide
Query:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN
        ++  RWKPP  N WKLN+DA+W  D +  G+GW +RD    +I  GCR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+
Subjt:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.0e-1141Show/hide
Query:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN
        ++  RWKPP  N WKLN+DA+W  D +  G+GW +RD    +I  GCR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+
Subjt:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.7e-1638.85Show/hide
Query:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGE
        +W+PP  + W LN+DASW +    GG+GW IR  +  ++ AG R +     +K LEASA+LEGLR L       ++  + PL +ETD+ EV +LLN + E
Subjt:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGE

Query:  DLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA
        DLT+   +++EI  +     + +F+K  R  N   H LA
Subjt:  DLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.2e-1839.58Show/hide
Query:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPV-----LPLVVETDALEVINLL
        RWKPP  N WKLN+DA+W  D + GG+GW +RD    +I A CR I  +  I +LE  A+ EGLRA+    +     P+      P+ +E+D+LE I+LL
Subjt:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPV-----LPLVVETDALEVINLL

Query:  NEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA
        + + +D TEI  +++EI  +     + S    SR  N+  HDLA
Subjt:  NEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.0e-1638.13Show/hide
Query:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGE
        +WKPP  N WKLN++A+W  D + GG+GW +RD    +I A CR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+ + +
Subjt:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGE

Query:  DLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA
        D TEI  +++EI  +     + S    SR  N+  H LA
Subjt:  DLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X19.7e-1241Show/hide
Query:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN
        ++  RWKPP  N WKLN+DA+W  D +  G+GW +RD    +I  GCR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+
Subjt:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN

A0A6J1DNV9 uncharacterized protein LOC1110224031.3e-1638.85Show/hide
Query:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGE
        +W+PP  + W LN+DASW +    GG+GW IR  +  ++ AG R +     +K LEASA+LEGLR L       ++  + PL +ETD+ EV +LLN + E
Subjt:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGE

Query:  DLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA
        DLT+   +++EI  +     + +F+K  R  N   H LA
Subjt:  DLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X29.7e-1241Show/hide
Query:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN
        ++  RWKPP  N WKLN+DA+W  D +  G+GW +RD    +I  GCR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+
Subjt:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN

A0A6J1DSV1 uncharacterized protein LOC1110236081.1e-1839.58Show/hide
Query:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPV-----LPLVVETDALEVINLL
        RWKPP  N WKLN+DA+W  D + GG+GW +RD    +I A CR I  +  I +LE  A+ EGLRA+    +     P+      P+ +E+D+LE I+LL
Subjt:  RWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPV-----LPLVVETDALEVINLL

Query:  NEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA
        + + +D TEI  +++EI  +     + S    SR  N+  HDLA
Subjt:  NEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.1e-0528.12Show/hide
Query:  RWKPPDPNHW-KLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEG
        +WK P P  W K N+DA+W  +    G+GW +R+ +  ++  G R + +   +  LEA   LE LR  V+     +   +   + E+DA  ++NLLN + 
Subjt:  RWKPPDPNHW-KLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEG

Query:  ---------EDLTEISMMIDEIKGVASP
                 ED+ ++    +E+K   +P
Subjt:  ---------EDLTEISMMIDEIKGVASP

AT4G29090.1 Ribonuclease H-like superfamily protein7.9e-0627.78Show/hide
Query:  SHSSHQRWKPPDPNHW-KLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAM----------LEGLRALVIMAKDRDIDPVLPLV
        + SS  RW+PP P+ W K N+DA+W  D +  G+GW +R+              +KG +KW+ A A+          LE +R  V+       + V   +
Subjt:  SHSSHQRWKPPDPNHW-KLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAM----------LEGLRALVIMAKDRDIDPVLPLV

Query:  VETDALEVINLLNEEG---------EDLTEISMMIDEIKGVASP
         E+D+  +I +LN +          +DL  +     E+K V  P
Subjt:  VETDALEVINLLNEEG---------EDLTEISMMIDEIKGVASP

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.6e-0431.43Show/hide
Query:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRA
        S + +W PP  +  K N DAS  E     GLGW +R+S  ++I  G  K   +   +  E S ++  ++A
Subjt:  SSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atgttggagagccattcgagtcaccaaagatggaaacctccggaccccaaccactggaagctgaactcagacgcctcatggctcgaggacgaagacgctggtgggcttgg
gtggtccatccgtgactccaacagatctctaattggagccggttgcaggaagattgcccagaagggtccgatcaaatggctcgaagcttcggcgatgctggaaggcttga
gggctctggttataatggcgaaagatagagatatcgacccagtgctaccgttggtagttgaaacggatgccttggaggtgataaacctgttgaacgaagaaggagaagat
cttaccgagatttccatgatgatcgatgaaatcaaaggtgtggcctctccagatttcgtctcctctttctccaaatgctcgcgagcggagaatcaggaaacccatgacct
tgcatgcgctggcgcgcgtttggcgaattttgttattcttttgggcgcgacttgtacccttagttag
mRNA sequenceShow/hide mRNA sequence
atgttggagagccattcgagtcaccaaagatggaaacctccggaccccaaccactggaagctgaactcagacgcctcatggctcgaggacgaagacgctggtgggcttgg
gtggtccatccgtgactccaacagatctctaattggagccggttgcaggaagattgcccagaagggtccgatcaaatggctcgaagcttcggcgatgctggaaggcttga
gggctctggttataatggcgaaagatagagatatcgacccagtgctaccgttggtagttgaaacggatgccttggaggtgataaacctgttgaacgaagaaggagaagat
cttaccgagatttccatgatgatcgatgaaatcaaaggtgtggcctctccagatttcgtctcctctttctccaaatgctcgcgagcggagaatcaggaaacccatgacct
tgcatgcgctggcgcgcgtttggcgaattttgttattcttttgggcgcgacttgtacccttagttag
Protein sequenceShow/hide protein sequence
MLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGED
LTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLACAGARLANFVILLGATCTLS