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Spg011715 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011715
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNuclear transcription factor Y subunit
Genome locationscaffold1:1079754..1082786
RNA-Seq ExpressionSpg011715
SyntenySpg011715
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594425.1 Nuclear transcription factor Y subunit A-7, partial [Cucurbita argyrosperma subsp. sororia]5.9e-2380.28Show/hide
Query:  IPTYGVSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        IP + VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQNHS SVINGLNQPS+T  NQY+TP Q GAGHA+
Subjt:  IPTYGVSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

XP_022926733.1 nuclear transcription factor Y subunit A-7-like isoform X1 [Cucurbita moschata]5.0e-2284.85Show/hide
Query:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQNHS SVINGLNQPS+T  NQY+TP QVGAGHA+
Subjt:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

XP_022926734.1 nuclear transcription factor Y subunit A-7-like isoform X2 [Cucurbita moschata]5.0e-2284.85Show/hide
Query:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQNHS SVINGLNQPS+T  NQY+TP QVGAGHA+
Subjt:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

XP_023003806.1 nuclear transcription factor Y subunit A-7-like isoform X1 [Cucurbita maxima]8.5e-2284.85Show/hide
Query:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQN+S SVINGLNQPS+TT NQY+TP QVGAGHA+
Subjt:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

XP_023003807.1 nuclear transcription factor Y subunit A-7-like isoform X2 [Cucurbita maxima]8.5e-2284.85Show/hide
Query:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQN+S SVINGLNQPS+TT NQY+TP QVGAGHA+
Subjt:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

TrEMBL top hitse value%identityAlignment
A0A6J1CZ21 Nuclear transcription factor Y subunit5.9e-2194.74Show/hide
Query:  MTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        MTSSVHDYSDNGEADEQQKYSESQNHS SVINGLNQPS+ TPNQYVTPPQVGAGHAM
Subjt:  MTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

A0A6J1EG07 Nuclear transcription factor Y subunit2.4e-2284.85Show/hide
Query:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQNHS SVINGLNQPS+T  NQY+TP QVGAGHA+
Subjt:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

A0A6J1EJ16 Nuclear transcription factor Y subunit2.4e-2284.85Show/hide
Query:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQNHS SVINGLNQPS+T  NQY+TP QVGAGHA+
Subjt:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

A0A6J1KNN1 Nuclear transcription factor Y subunit4.1e-2284.85Show/hide
Query:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQN+S SVINGLNQPS+TT NQY+TP QVGAGHA+
Subjt:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

A0A6J1KQA2 Nuclear transcription factor Y subunit4.1e-2284.85Show/hide
Query:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM
        VS GVHYNPMTSSVHDYSDNGEAD+ QKYSESQN+S SVINGLNQPS+TT NQY+TP QVGAGHA+
Subjt:  VSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGTCTCCACCAACACTGGTTGAGACCTTCTTGGATGCCATCGAGGAAGCGCCCAAAATCACACGCTCTGATACCAACTTATGGTGTTTCACTTGGTGTGCACTA
CAACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGAATCTCAGAATCATTCTCCATCAGTCATAAATGGACTAA
ATCAACCGAGTGTCACAACCCCAAATCAGTATGTAACACCTCCACAAGTTGGAGCAGGGCATGCAATGGTACTATATTCACATTACTCTCTCTCTCTCTCTCCCTTTCTC
TCCCTCTCTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGTCTCCACCAACACTGGTTGAGACCTTCTTGGATGCCATCGAGGAAGCGCCCAAAATCACACGCTCTGATACCAACTTATGGTGTTTCACTTGGTGTGCACTA
CAACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGAATCTCAGAATCATTCTCCATCAGTCATAAATGGACTAA
ATCAACCGAGTGTCACAACCCCAAATCAGTATGTAACACCTCCACAAGTTGGAGCAGGGCATGCAATGGTACTATATTCACATTACTCTCTCTCTCTCTCTCCCTTTCTC
TCCCTCTCTCGTTAA
Protein sequenceShow/hide protein sequence
MLSLHQHWLRPSWMPSRKRPKSHALIPTYGVSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAMVLYSHYSLSLSPFL
SLSR