CuGenDBv2

Gene ID	Spg011810
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ribosomal RNA-processing protein 17
Genome location	scaffold1:3403289..3406372
RNA-Seq Expression	Spg011810
Synteny	Spg011810
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7026594.1 hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.2e-72

84.62

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE EEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EK+LVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        D +  DED EE PLAPISE TTYD+GNIKVTVTTSEV R+EEIDPIDK Q +T+QL AKDKKH+LP+TKKKPFKKVAR+KSR
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

5.5e-72

86.11

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+N+G+EGG+LAQPR RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVLYGG+LPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        D E+E  EE P APISE TTYD+GNIKVTV TSEVSR+ EI PIDK+QTATTQL AKDKKHNLPITKKKPFKKVA+QKSR
Subjt:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

XP_022926799.1 ribosomal RNA-processing protein 17 [Cucurbita moschata]

5.5e-72

85.16

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE EEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EKDLVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        D +  DED EE PLAPISE T YD+GNIKVTVTTSEV R+EEIDPIDK Q +T+QL AKDKKH+LPITKKKPFKKVAR+KSR
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

4.2e-72

84.62

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE EEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EK+LVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        D +  DED EE PLAPISE TTYD+GNIKVTVTTSEV R+EEIDPIDK Q +T+QL AKDKKH+LP+TKKKPFKKVAR+KSR
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

3.8e-73

85.71

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV N+GEEG +LAQP ARHIKKRAL+NKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RKKR+LEKDLVLYGGVLPADRPVDE+ND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        D E  +ED EE PLAP SE TTYD+GNIKVTV TSEVSREEEIDPIDK QTATTQLFAKDKKHNLP+TKKKPFKKVA+Q+SR
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

1.0e-68

82.97

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+N+GEEGG+LAQP ARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRKLEKDLVL+GGVLPADR VD+QND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTA--TTQLFAKDKKHNLPITKKKPFKKVARQKSR
        DQ +E  EE PLAP+SE TTYDNGN+KVTVTTSEVSRE+EIDPIDK QTA  T QL  KDKKHNLPITKKK FKKVA+Q+ R
Subjt:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTA--TTQLFAKDKKHNLPITKKKPFKKVARQKSR

A0A1S3C1A3 ribosomal RNA-processing protein 17

6.5e-71

85.56

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+N+GEEGG+LAQP ARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRKLEKDLVLYGGVLPADR VD+QND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        DQEDE  EE PLAP SE  TYDNGN+KVTVTTSEVSRE EIDPIDK QTA  QL  KDKKHNLPITKKK FKKVA+Q+SR
Subjt:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

A0A6J1CL67 ribosomal RNA-processing protein 17-like

2.6e-72

86.11

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+N+G+EGG+LAQPR RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVLYGG+LPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        D E+E  EE P APISE TTYD+GNIKVTV TSEVSR+ EI PIDK+QTATTQL AKDKKHNLPITKKKPFKKVA+QKSR
Subjt:  DQEDEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

A0A6J1EG67 ribosomal RNA-processing protein 17

2.6e-72

85.16

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE EEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EKDLVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        D +  DED EE PLAPISE T YD+GNIKVTVTTSEV R+EEIDPIDK Q +T+QL AKDKKH+LPITKKKPFKKVAR+KSR
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

A0A6J1KRQ7 ribosomal RNA-processing protein 17

5.9e-72

84.62

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Query:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND
        MV+NE  EGG L QP +RH+KK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE+RKKRK+EKDLVL+GGVLPADRPVDEQND
Subjt:  MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQND

Query:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR
        D +  DED EE PLAPISE TTYD+GNIKVTVTTSEV REEEIDPIDK Q +T+QL AKDKKH+LPITKKKPFKKVAR+KSR
Subjt:  DQE--DEDGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSR

SwissProt top hits

e value

%identity

Alignment

O14012 Ribosomal RNA-processing protein 17

5.1e-04

31.4

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Query:  KKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKR------RKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQNDDQED-----EDGEE
        +K+  K +   + F+++  ++Y+TGFHKRK +RRK A+ Q E+ KR      RK + +++KR+L + L  +   L +    DE++  QED     +  EE
Subjt:  KKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKR------RKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQNDDQED-----EDGEE

Query:  NPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRY
        + + P  + T YD  +  VTV   E   +EEI    K    T ++       ++P+   KP K  A++K RY
Subjt:  NPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRY

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

2.8e-34

55.93

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Query:  EEGGQLAQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQNDDQEDE
        EE G LA P  ARHI KRA KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RK RKLE+ +V   G    D    E  D+ + E
Subjt:  EEGGQLAQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQNDDQEDE

Query:  DGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDK---KHNLPITKKKPFKKVARQKS
        D E  P A  S  T YD G +KVTVTTSE+SREEE +PI K +T +T+  +  K   K  +P+ K KP K+  R+ +
Subjt:  DGEENPLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDK---KHNLPITKKKPFKKVARQKS

Sequences

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CDS sequence

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ATGGTCGAGAACGAAGGAGAGGAAGGGGGTCAACTCGCACAACCTCGTGCTCGACACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTTCGGTCTCTTTCAATGAGAA
GGATTTGAGGGACTATGTCACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAGGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGATCGCA
AAAAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGATCGGCCTGTTGATGAGCAGAATGATGACCAGGAGGATGAGGATGGGGAAGAGAAT
CCATTGGCACCCATTTCTGAGATGACGACGTATGACAATGGAAATATCAAAGTCACCGTGACAACAAGTGAAGTATCTCGTGAAGAAGAAATCGATCCCATTGACAAGAC
ACAGACAGCAACAACCCAATTGTTTGCGAAGGATAAGAAGCATAACTTGCCAATTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGACAGAAGTCAAGGTATGGCAATG
GGCTAGTATTGTATATCATCTCAGAGTTCACCAGCTTTGATTCCTTGGTCTTTGGATGA

mRNA sequence

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Protein sequence

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MVENEGEEGGQLAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEDRKKRKLEKDLVLYGGVLPADRPVDEQNDDQEDEDGEEN
PLAPISEMTTYDNGNIKVTVTTSEVSREEEIDPIDKTQTATTQLFAKDKKHNLPITKKKPFKKVARQKSRYGNGLVLYIISEFTSFDSLVFG

Spg011810 (gene) of Sponge gourd (cylindrica) v1 genome