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Spg011860 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011860
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold1:3478559..3479709
RNA-Seq ExpressionSpg011860
SyntenySpg011860
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG9449161.1 hypothetical protein H6P81_009126 [Aristolochia fimbriata]3.4e-1650.51Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFD---GFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFVN
        MAKA  S+ LNL  +  LSL++F+IS    + F    G    + +L+C+  HGVE GDTCFD+A  F LTT  FN +NPNLNC++LF+GQW+C+ G VN
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFD---GFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFVN

KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]1.4e-2060.82Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPS--LQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV
        MAKA  SIA+   FL A SLLIF+ISV+ R  F   V  E S  LQC+K +GV+SGDTCF +A  FKLTT+ F+FINPNLNCSALF+ QW+C+N F+
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPS--LQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]6.7e-2060.22Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKS-FDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCIN
        MAKA+ S +  + FL A SLLIFSISVE+R + F G V+    LQC+KV+GV++GDTCFDL   FK+TT  F+FINPNLNC+ LFIGQW+C++
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKS-FDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCIN

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]1.8e-2061.86Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPS--LQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV
        MAKA   IA+   FL A  LLIFSISV+        V  EPS  LQC+K +GV+SGDTCF LA+TFKL+T+ FNFINPNLNCSALF+GQW+C+N F+
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPS--LQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]9.7e-1956.84Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV
        MAKA  SIA+   FL A SLLIF+ISV+     +   +    LQC+K +GV+SGDTCF +A  FKLTT+ F+FINPNLNCSALF+ QW+C+N F+
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein3.2e-2060.22Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKS-FDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCIN
        MAKA+ S +  + FL A SLLIFSISVE+R + F G V+    LQC+KV+GV++GDTCFDL   FK+TT  F+FINPNLNC+ LFIGQW+C++
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKS-FDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCIN

A0A0A0KLD2 LysM domain-containing protein6.5e-2160.82Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPS--LQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV
        MAKA  SIA+   FL A SLLIF+ISV+ R  F   V  E S  LQC+K +GV+SGDTCF +A  FKLTT+ F+FINPNLNCSALF+ QW+C+N F+
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPS--LQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like8.5e-2161.86Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPS--LQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV
        MAKA   IA+   FL A  LLIFSISV+        V  EPS  LQC+K +GV+SGDTCF LA+TFKL+T+ FNFINPNLNCSALF+GQW+C+N F+
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPS--LQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFV

A0A2Z7A345 LysM domain-containing protein8.3e-1646.81Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGF
        MAKA ++ ++ L F   LSL++ +   ESR +         +L C+ V  V  GDTCFD+A +F LTT +F+ INPN+NC ALF+GQW+CI+GF
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGF

A0A2Z7A4L5 LysM domain-containing protein6.3e-1646.81Show/hide
Query:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGF
        MAKA ++ ++ L F   LSL++ +   ESR +         +L C+ V  V  GDTCFD+A +F LTT +F+ INPN+NC ALF+GQW+CI+GF
Subjt:  MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGGCTCTGAGTTCGATTGCCTTGAATCTTACCTTCTTATTCGCTCTCTCTCTTCTCATCTTTTCCATTTCTGTCGAAAGTCGAAAATCCTTTGATGGATTTGT
GGACGTAGAGCCGAGTTTGCAATGCAGCAAAGTTCATGGAGTGGAGAGTGGAGACACTTGTTTCGATCTTGCAAATACATTCAAGTTGACCACTAATCAGTTCAATTTTA
TCAATCCAAATCTCAATTGCTCTGCTCTCTTTATTGGTCAATGGGTTTGCATCAATGGCTTTGTCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGGCTCTGAGTTCGATTGCCTTGAATCTTACCTTCTTATTCGCTCTCTCTCTTCTCATCTTTTCCATTTCTGTCGAAAGTCGAAAATCCTTTGATGGATTTGT
GGACGTAGAGCCGAGTTTGCAATGCAGCAAAGTTCATGGAGTGGAGAGTGGAGACACTTGTTTCGATCTTGCAAATACATTCAAGTTGACCACTAATCAGTTCAATTTTA
TCAATCCAAATCTCAATTGCTCTGCTCTCTTTATTGGTCAATGGGTTTGCATCAATGGCTTTGTCAACTAA
Protein sequenceShow/hide protein sequence
MAKALSSIALNLTFLFALSLLIFSISVESRKSFDGFVDVEPSLQCSKVHGVESGDTCFDLANTFKLTTNQFNFINPNLNCSALFIGQWVCINGFVN