; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011902 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011902
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Genome locationscaffold1:773451..774305
RNA-Seq ExpressionSpg011902
SyntenySpg011902
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017131 - Small ribonucleoprotein associated, SmB/SmN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052454.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa]2.2e-14398.58Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAAR
        MAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSAAR
Subjt:  MAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAAR

Query:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_004134546.1 small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus]9.8e-14497.89Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_008439504.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]2.6e-14498.59Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_022925730.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]2.2e-14398.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

XP_038882444.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida]3.1e-14599.3Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KPA9 Small nuclear ribonucleoprotein-associated protein4.8e-14497.89Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A1S3AZK2 Small nuclear ribonucleoprotein-associated protein1.3e-14498.59Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A5A7UAP6 Small nuclear ribonucleoprotein-associated protein1.1e-14398.58Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAAR
        MAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSAAR
Subjt:  MAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAAR

Query:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPV+GPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1EJ14 Small nuclear ribonucleoprotein-associated protein1.1e-14398.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1IQN3 Small nuclear ribonucleoprotein-associated protein7.6e-14296.83Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN+ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRA+GRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP++GPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ

SwissProt top hitse value%identityAlignment
P14678 Small nuclear ribonucleoprotein-associated proteins B and B'2.4e-4452.51Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP--VPPPQ
         A  GPGIGRA+GRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP  + PP 
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP--VPPPQ

Query:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             PG  PP   P  +PP     PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Q58DW4 Small nuclear ribonucleoprotein-associated protein B'1.2e-4352.12Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP--VPPPQ
         A  GPGIGRA+GRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+        PPP+GRG PPP  + PP 
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP--VPPPQ

Query:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             PG  PP   P  +PP     PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B'1.9e-4448.72Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS
         A  GPGIGRA+GRG+P   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP       
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS

Query:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP
                      PP   + PMG PPTG        PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPP

Q9PV94 Small nuclear ribonucleoprotein-associated protein B'7.8e-4351.94Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---VPPP
         A  GPG+GRA+GRG+P  AP+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP    PG+     G  PPP+ RG PPP    PPP
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP---VPPP

Query:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             RP   PP   P P + A  PMG PP G  MR    PP PGM  PPP PGM PP
Subjt:  QFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Q9TU67 Small nuclear ribonucleoprotein-associated protein B'5.4e-4452.12Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP--VPPPQ
         A  GPGIGRA+GRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP  + PP 
Subjt:  AAMAGPGIGRASGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP--VPPPQ

Query:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP
             PG  PP   P  +PP     PMG PP G  MR    PP PGM  PPP PG+ PP
Subjt:  FSAARPGGAPPQ--PFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPP

Arabidopsis top hitse value%identityAlignment
AT4G20440.1 small nuclear ribonucleoprotein associated protein B2.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ
        AA+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.2 small nuclear ribonucleoprotein associated protein B2.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ
        AA+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.3 small nuclear ribonucleoprotein associated protein B2.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ
        AA+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT4G20440.4 small nuclear ribonucleoprotein associated protein B2.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ
        AA+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    F PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQ

AT5G44500.1 Small nuclear ribonucleoprotein family protein5.8e-8670.77Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN
        MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKTNEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN

Query:  AAAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS
          A+AGPGIGRA+GRG+PT PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP      PP  G+G PPP       
Subjt:  AAAMAGPGIGRASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS

Query:  AARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVFGPPRPGMPP-PPNPQNQQ
            G  PP P P PPQ+   QRPM  PP G +MRGPPPP   GM  PPP RPGMPPP  G  P+F PP PGMPP PPN  NQQ
Subjt:  AARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVFGPPRPGMPP-PPNPQNQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTACATTAACTACCGGATGAGGGTCACGATCCAAGATGGTCGTCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACCAACGAGGAACGTGACGAGCGTCGTACCCTTGGGCTCGTTCTTC
TACGTGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCTCCGCCTGCTGAAGAGTCCCGTGCCAAGGCCGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGCCGT
GCCTCTGGGAGGGGTATCCCGACTGCTCCTCTTGTTCAAGCCCAACCCGGTCTTGCTGGGCCAGTTCGTGGAGTCGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCACCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCCCCCGTCATTCGTCCACCTGGTCAGATGCCAATGTTTCCAGGGCAAGCTCCACCTC
CGGTGGGAAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCAGCAGCGAGACCAGGGGGAGCCCCGCCACAACCATTCCCAGTTCCTCCTCAATTTGCGCAGAGA
CCCATGGGGCCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCGCCTCCACCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGG
CGCAGTTCCTGTTTTCGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTACATTAACTACCGGATGAGGGTCACGATCCAAGATGGTCGTCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACCAACGAGGAACGTGACGAGCGTCGTACCCTTGGGCTCGTTCTTC
TACGTGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCTCCGCCTGCTGAAGAGTCCCGTGCCAAGGCCGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGCCGT
GCCTCTGGGAGGGGTATCCCGACTGCTCCTCTTGTTCAAGCCCAACCCGGTCTTGCTGGGCCAGTTCGTGGAGTCGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCACCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCCCCCGTCATTCGTCCACCTGGTCAGATGCCAATGTTTCCAGGGCAAGCTCCACCTC
CGGTGGGAAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCAGCAGCGAGACCAGGGGGAGCCCCGCCACAACCATTCCCAGTTCCTCCTCAATTTGCGCAGAGA
CCCATGGGGCCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCGCCTCCACCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGG
CGCAGTTCCTGTTTTCGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG
Protein sequenceShow/hide protein sequence
MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGR
ASGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAARPGGAPPQPFPVPPQFAQR
PMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVFGPPRPGMPPPPNPQNQQQNQQQ