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Spg012016 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012016
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationscaffold1:1520619..1521272
RNA-Seq ExpressionSpg012016
SyntenySpg012016
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]1.8e-5788.89Show/hide
Query:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG
        MNL TTM+      + HKLQN+PSFKLSRYSS ARDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG
Subjt:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG

Query:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSFALD
        FVGFWERLRIKLAALRSRW DCFH IFGFFSFALD
Subjt:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSFALD

KAG6594453.1 hypothetical protein SDJN03_11006, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5258.08Show/hide
Query:  MNTINSQTHPWPQIPIARVNFLLPWHLQPNPTPFSKPISTQDSNLHSESKPKSESNSNSQKPEPKIGSKSPSSFNGYNPM-----PLMNLATTMDS----
        M T NS  HPWPQI IARV  L                                      K +   GSKS +SFNGYNP+     PL+   TTMDS    
Subjt:  MNTINSQTHPWPQIPIARVNFLLPWHLQPNPTPFSKPISTQDSNLHSESKPKSESNSNSQKPEPKIGSKSPSSFNGYNPM-----PLMNLATTMDS----

Query:  ---PSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWE
           P  T E +KL N+ S KLSR+SS  RDSD  DDLRYTSLKD+LLNSPSYSGVN+FNEF+S NISIRNELVKRAASAYLQSAA LVSRNES  VGFW 
Subjt:  ---PSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWE

Query:  RLRIKLAALRSRWWDCFHHIFGFFSFALD
        RLRIKLAALRSRW + FH+IFGFF+FALD
Subjt:  RLRIKLAALRSRWWDCFHHIFGFFSFALD

XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]4.8e-5083.33Show/hide
Query:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG
        MNL T   +     +PHKLQNLPSFKLSRYSS  RDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RNES 
Subjt:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG

Query:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSF
        FVGFWERLRIKLAALRSRW DCF   FGFF F
Subjt:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSF

XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]4.4e-5183.82Show/hide
Query:  MNLAT---TMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRN
        MNL T   TMD      +PHKLQNLPSFKLSRYSS  RDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RN
Subjt:  MNLAT---TMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRN

Query:  ESGFVGFWERLRIKLAALRSRWWDCFHHIFGFFSFA
        ES FVGFWERLRIKLAALRSRW DCF   FGFF FA
Subjt:  ESGFVGFWERLRIKLAALRSRWWDCFHHIFGFFSFA

XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]6.7e-5271.76Show/hide
Query:  SKPKSESNSNSQKPEPKIGSKSPS---SFNGYNPMPLMNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNE
        SK  + S+ N Q    K  ++ P      NG+NP+ +MNL T   +     +PHKLQNLPSFKLSRYSS  RDSDAGDDLRYTSLKDILLNSPSYSGVNE
Subjt:  SKPKSESNSNSQKPEPKIGSKSPS---SFNGYNPMPLMNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNE

Query:  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWWDCFHHIFGFFSFA
        FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRW DCF   FGFF FA
Subjt:  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWWDCFHHIFGFFSFA

TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein3.7e-5686.67Show/hide
Query:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG
        MNL  T    +   +PH+LQN+PSFKLSRYSS ARDSDA DDLRYTSLKDILLNSPSYSGVN+FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG
Subjt:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG

Query:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSFALD
        FVGFWERLRIKLAALRSRW DCFH IFGFFSFALD
Subjt:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSFALD

A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A8.9e-5888.89Show/hide
Query:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG
        MNL TTM+      + HKLQN+PSFKLSRYSS ARDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG
Subjt:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG

Query:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSFALD
        FVGFWERLRIKLAALRSRW DCFH IFGFFSFALD
Subjt:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSFALD

A0A6J1CYB8 uncharacterized protein LOC1110157129.5e-4491.43Show/hide
Query:  AEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLA
        +E HKLQN+PSFKLSRYSSGARDSDAGDDLRY SLKDILLNSPSYSGVN+FN+FNSSNISIRNELVKRAASAYLQSAAILVSRNES FV FWERLR KLA
Subjt:  AEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLA

Query:  ALRSR
        ALRSR
Subjt:  ALRSR

A0A6J1EJR7 uncharacterized protein LOC1114332382.3e-5083.33Show/hide
Query:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG
        MNL T   +     +PHKLQNLPSFKLSRYSS  RDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RNES 
Subjt:  MNLATTMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESG

Query:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSF
        FVGFWERLRIKLAALRSRW DCF   FGFF F
Subjt:  FVGFWERLRIKLAALRSRWWDCFHHIFGFFSF

A0A6J1ISV4 uncharacterized protein LOC1114781152.1e-5183.82Show/hide
Query:  MNLAT---TMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRN
        MNL T   TMD      +PHKLQNLPSFKLSRYSS  RDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFN SNI+IRNELVKRAASAYLQSAAILV RN
Subjt:  MNLAT---TMDSPSMTAEPHKLQNLPSFKLSRYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRN

Query:  ESGFVGFWERLRIKLAALRSRWWDCFHHIFGFFSFA
        ES FVGFWERLRIKLAALRSRW DCF   FGFF FA
Subjt:  ESGFVGFWERLRIKLAALRSRWWDCFHHIFGFFSFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein3.2e-0740.24Show/hide
Query:  DSDAGDDLRYTSLKDILLNS---------PSYSGVNE----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
        D +  ++L+YTSLKD++ +S         P YS  ++     +E +SSNI+I NELVKRAAS Y+QS+ I+++ + + F  F
Subjt:  DSDAGDDLRYTSLKDILLNS---------PSYSGVNE----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF

AT5G06280.1 unknown protein7.3e-0439.74Show/hide
Query:  YTSLKDIL-------LNSPSYSG-VNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA
        YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ + L+A
Subjt:  YTSLKDIL-------LNSPSYSG-VNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA

AT5G06280.3 unknown protein7.3e-0439.74Show/hide
Query:  YTSLKDIL-------LNSPSYSG-VNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA
        YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ + L+A
Subjt:  YTSLKDIL-------LNSPSYSG-VNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACCATAAACTCCCAAACTCATCCATGGCCCCAAATCCCAATTGCCCGAGTCAATTTCCTACTTCCATGGCACCTTCAACCAAATCCAACCCCTTTCTCTAAACC
AATCTCAACCCAAGATTCCAATCTCCATTCAGAATCGAAACCAAAATCAGAATCAAATTCAAATTCCCAAAAACCAGAGCCAAAAATTGGGTCCAAATCCCCAAGCTCCT
TTAATGGCTACAATCCCATGCCTCTGATGAATCTCGCAACAACAATGGATTCACCATCGATGACAGCAGAGCCTCATAAGCTTCAGAACTTACCTTCTTTCAAGCTCTCC
CGGTATTCCTCCGGCGCCCGAGATTCCGACGCCGGCGATGACCTCCGGTACACCAGCCTGAAGGACATTCTTCTGAACTCGCCGTCGTACAGCGGCGTAAATGAGTTCAA
CGAGTTCAATTCGTCCAACATTTCGATCCGAAACGAGCTGGTGAAACGGGCGGCGTCGGCGTACCTTCAATCGGCGGCGATTTTGGTCAGCCGGAACGAGAGCGGTTTCG
TCGGGTTTTGGGAGAGGCTTCGGATCAAACTCGCCGCCCTCCGTTCCCGATGGTGGGATTGTTTTCACCACATTTTTGGCTTCTTTAGCTTTGCCCTAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATACCATAAACTCCCAAACTCATCCATGGCCCCAAATCCCAATTGCCCGAGTCAATTTCCTACTTCCATGGCACCTTCAACCAAATCCAACCCCTTTCTCTAAACC
AATCTCAACCCAAGATTCCAATCTCCATTCAGAATCGAAACCAAAATCAGAATCAAATTCAAATTCCCAAAAACCAGAGCCAAAAATTGGGTCCAAATCCCCAAGCTCCT
TTAATGGCTACAATCCCATGCCTCTGATGAATCTCGCAACAACAATGGATTCACCATCGATGACAGCAGAGCCTCATAAGCTTCAGAACTTACCTTCTTTCAAGCTCTCC
CGGTATTCCTCCGGCGCCCGAGATTCCGACGCCGGCGATGACCTCCGGTACACCAGCCTGAAGGACATTCTTCTGAACTCGCCGTCGTACAGCGGCGTAAATGAGTTCAA
CGAGTTCAATTCGTCCAACATTTCGATCCGAAACGAGCTGGTGAAACGGGCGGCGTCGGCGTACCTTCAATCGGCGGCGATTTTGGTCAGCCGGAACGAGAGCGGTTTCG
TCGGGTTTTGGGAGAGGCTTCGGATCAAACTCGCCGCCCTCCGTTCCCGATGGTGGGATTGTTTTCACCACATTTTTGGCTTCTTTAGCTTTGCCCTAGACTAG
Protein sequenceShow/hide protein sequence
MNTINSQTHPWPQIPIARVNFLLPWHLQPNPTPFSKPISTQDSNLHSESKPKSESNSNSQKPEPKIGSKSPSSFNGYNPMPLMNLATTMDSPSMTAEPHKLQNLPSFKLS
RYSSGARDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWWDCFHHIFGFFSFALD