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Spg012020 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012020
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-binding protein DDB_G0278111
Genome locationscaffold1:1910896..1913102
RNA-Seq ExpressionSpg012020
SyntenySpg012020
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR002836 - PDCD5-like
IPR036883 - PDCD5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8519555.1 hypothetical protein F0562_013821 [Nyssa sinensis]7.6e-2498.51Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

KAG6594362.1 Programmed cell death protein 5, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2495.71Show/hide
Query:  WTTVARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        W  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  WTTVARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022142304.1 DNA-binding protein DDB_G0278111 isoform X1 [Momordica charantia]7.6e-2498.51Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022142306.1 DNA-binding protein DDB_G0278111 isoform X2 [Momordica charantia]7.6e-2498.51Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

XP_038881892.1 DNA-binding protein DDB_G0278111 [Benincasa hispida]7.6e-2498.51Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

TrEMBL top hitse value%identityAlignment
A0A498IT06 Uncharacterized protein6.3e-2497.01Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI+LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A5J4ZLS1 Uncharacterized protein3.7e-2498.51Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A5N5FEY4 DNA-binding protein6.3e-2497.01Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI+LLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1CKK4 DNA-binding protein DDB_G0278111 isoform X13.7e-2498.51Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1CLT3 DNA-binding protein DDB_G0278111 isoform X23.7e-2498.51Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

SwissProt top hitse value%identityAlignment
O14737 Programmed cell death protein 51.0e-0743.28Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        ++ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR+ +  D+D
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

P56812 Programmed cell death protein 51.3e-0743.28Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        ++ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR+ +  D+D
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

Q2HJH9 Programmed cell death protein 51.3e-0743.28Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        ++ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR+ +  D+D
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

Q54YS0 DNA-binding protein DDB_G02781111.7e-1052.24Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        ++RI +VKPEK+R +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ TK+T +T++RR   +EDDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

Q5RBT0 Programmed cell death protein 51.0e-0743.28Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        ++ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR+ +  D+D
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

Arabidopsis top hitse value%identityAlignment
AT1G29850.1 double-stranded DNA-binding family protein6.2e-2491.04Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.2 double-stranded DNA-binding family protein6.2e-2491.04Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.3 double-stranded DNA-binding family protein1.7e-2187.1Show/hide
Query:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSV
        +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT+    +V
Subjt:  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATTTGCCAAGCTCGCGTCAATGCCAGGTTTGGTAGCACTAAAGAGATGGGTTCTGGAGAGAATCAGTGGTGGACTACTGTTGCTCGAATTGCATTGGTTAAACC
TGAGAAGGCGAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATCGTAGAGAAGGTCTCTGAAGAGAGGCTTATAACATTGCTTGAACAGATCAACA
ACCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTCGAGGATGACGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTATTTGCCAAGCTCGCGTCAATGCCAGGTTTGGTAGCACTAAAGAGATGGGTTCTGGAGAGAATCAGTGGTGGACTACTGTTGCTCGAATTGCATTGGTTAAACC
TGAGAAGGCGAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATCGTAGAGAAGGTCTCTGAAGAGAGGCTTATAACATTGCTTGAACAGATCAACA
ACCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTCGAGGATGACGATTAG
Protein sequenceShow/hide protein sequence
MSICQARVNARFGSTKEMGSGENQWWTTVARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD