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Spg012081 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012081
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold1:1986397..1986775
RNA-Seq ExpressionSpg012081
SyntenySpg012081
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030924745.1 uncharacterized protein LOC115951731 [Quercus lobata]8.1e-0436.99Show/hide
Query:  LKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWAK
        ++FA  LG ++++ E D LQ I  IS+E       G ++++IR  + ++S + F + +R CN  VDA+AK AK
Subjt:  LKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWAK
TrEMBL top hitse value%identityAlignment
A0A2P5C3U4 RNase H domain-containing protein5.1e-0432.89Show/hide
Query:  PVLVLKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWA
        PVL+ +F D+ G   +L+ESD    +NL++ +      +G +V +++ L LS+  +S  ++ R CN  V  +AKW+
Subjt:  PVLVLKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWA
A0A2P5FLH6 NB-ARC domain, LRR domain containing protein5.1e-0433.33Show/hide
Query:  LKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWA
        +KFA       IL++SD L  +NLI+     + ++G ++++I++L   L E+   Y++R  N T   +AKWA
Subjt:  LKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWA
A0A7N2M8D8 RNase H domain-containing protein2.3e-0434.25Show/hide
Query:  LKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWAK
        ++FA  +G + ++VE D    IN +++ +   +  G V+++IR L+L+     F++ SR CN+  DA+AK AK
Subjt:  LKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-0434.72Show/hide
Query:  LVLKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAK
        L L++A S+G   + + SD  Q I  I+ E+      G + D I  LSL  ++ SFS++ R  N   D +AK
Subjt:  LVLKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGCAGCGTGGAATGCTGGTCCATCCTGTATTGGTTTTAAAGTTTGCTGATTCATTGGGATGTAAGAATATACTGGTGGAATCCGATTGCCTCCAAACGATCAA
TCTAATATCAAAGGAAGCAGATGTGAGGAACAAAATGGGGACGGTGGTGGATGAAATTCGAGAGTTATCTTTGTCTTTATCTGAGAATTCCTTCTCATATATCTCTAGGA
AATGTAATGCAACAGTGGATGCTATTGCAAAATGGGCGAAGATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGCAGCGTGGAATGCTGGTCCATCCTGTATTGGTTTTAAAGTTTGCTGATTCATTGGGATGTAAGAATATACTGGTGGAATCCGATTGCCTCCAAACGATCAA
TCTAATATCAAAGGAAGCAGATGTGAGGAACAAAATGGGGACGGTGGTGGATGAAATTCGAGAGTTATCTTTGTCTTTATCTGAGAATTCCTTCTCATATATCTCTAGGA
AATGTAATGCAACAGTGGATGCTATTGCAAAATGGGCGAAGATATAA
Protein sequenceShow/hide protein sequence
MSMQRGMLVHPVLVLKFADSLGCKNILVESDCLQTINLISKEADVRNKMGTVVDEIRELSLSLSENSFSYISRKCNATVDAIAKWAKI