; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg012096 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012096
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S Ribosomal protein
Genome locationscaffold1:2491674..2500757
RNA-Seq ExpressionSpg012096
SyntenySpg012096
Gene Ontology termsGO:0005525 - GTP binding (molecular function)
InterPro domainsIPR011719 - Conserved hypothetical protein CHP02058
IPR037103 - Tubulin/FtsZ-like, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439752.1 PREDICTED: uncharacterized protein LOC103484457 isoform X1 [Cucumis melo]4.7e-8989.18Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSI+LNL F   TD RFRSYP SN H SS  HLICSLTRPRISRL+KVTA SSMEVEQGG+SAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_022142213.1 uncharacterized protein LOC111012382 isoform X1 [Momordica charantia]7.3e-9087.69Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSN-HHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRA
        M GSIV+N+PFPWA +LRFRSY  SN + SSSSAH +CSLTRP ISRL+K TAASSMEVE+GG+SA V STASPMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSN-HHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVPQ+LQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_022925764.1 uncharacterized protein LOC111433074 [Cucurbita moschata]1.2e-9292.78Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GS VLNL FP  TDLRFRSYPLSN HSSSSAHLICS TRP ISRLVKVTAASSMEVEQGGKSAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_023544561.1 uncharacterized protein LOC111804102 [Cucurbita pepo subsp. pepo]1.4e-9393.3Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSIVLNL FP  TDLRFRSYPLSN HSSSSAHLICS TRPRISRLVKVTAASSMEVEQGGKSAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTF EMKLQIKLGVP SLQQSLD+EKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_038883708.1 uncharacterized protein LOC120074614 isoform X1 [Benincasa hispida]6.2e-8990.21Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSIVLN  F   TD RFRSY LSN + S SAHLICSLTRPRISRLVKVTA SSMEVEQGGKSAP  ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

TrEMBL top hitse value%identityAlignment
A0A0A0KNJ4 Uncharacterized protein1.5e-8888.66Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M  SI+LNL F   TD RFRSY LSN H SSS HLICSLTRPRISRL+KVTA SSMEVEQGG+SAPV ST  PMKLLFVEMGVGYDQHGQD+TAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A1S3B079 uncharacterized protein LOC103484457 isoform X12.3e-8989.18Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSI+LNL F   TD RFRSYP SN H SS  HLICSLTRPRISRL+KVTA SSMEVEQGG+SAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1CMQ6 uncharacterized protein LOC111012382 isoform X13.5e-9087.69Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSN-HHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRA
        M GSIV+N+PFPWA +LRFRSY  SN + SSSSAH +CSLTRP ISRL+K TAASSMEVE+GG+SA V STASPMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSN-HHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLGVPQ+LQQSLD+EKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1ED44 uncharacterized protein LOC1114330745.8e-9392.78Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GS VLNL FP  TDLRFRSYPLSN HSSSSAHLICS TRP ISRLVKVTAASSMEVEQGGKSAPV ST  PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKI+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1ILT2 uncharacterized protein LOC1114776231.1e-8376.75Show/hide
Query:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC
        M GSIVLNL FP  TDLRFRSYPLSN HSSSSAHLICS TRPRISRLVKVTAASSMEVEQGGKSAPV STA PMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDV---------EKVKSVF-------------------------PYGKILNVEVVDGGLI
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVP SLQQSLD           K + ++                         P GKI+NV+VVDGGLI
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDV---------EKVKSVF-------------------------PYGKILNVEVVDGGLI

Query:  CSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CSSGVHVEEMGDKNDDCYIVNAAVYVGY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29040.1 unknown protein1.7e-6066.13Show/hide
Query:  DLRFRSYPLSNHHSSSSAHLICSLTR-------PRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNS
        +LR R  P     SSS    + S ++       P+ISR +KV A S+ME      +  V +  + MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNS
Subjt:  DLRFRSYPLSNHHSSSSAHLICSLTR-------PRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNS

Query:  IPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        IPAFRRGSIPGV+FGEMKLQIKLGVP SL Q LD++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  IPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

AT1G29040.2 unknown protein7.8e-5059.14Show/hide
Query:  DLRFRSYPLSNHHSSSSAHLICSLTR-------PRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNS
        +LR R  P     SSS    + S ++       P+ISR +KV A S+ME      +  V +  + MKLLFVEMGVGYDQHGQD+T+AAM+AC        
Subjt:  DLRFRSYPLSNHHSSSSAHLICSLTR-------PRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNS

Query:  IPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
               SIPGV+FGEMKLQIKLGVP SL Q LD++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  IPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

AT1G29040.3 unknown protein1.9e-1951.85Show/hide
Query:  DLRFRSYPLSNHHSSSSAHLICSLTR-------PRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNS
        +LR R  P     SSS    + S ++       P+ISR +KV A S+ME      +  V +  + MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNS
Subjt:  DLRFRSYPLSNHHSSSSAHLICSLTR-------PRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNS

Query:  IPAFRRGS
        IPAFRRG+
Subjt:  IPAFRRGS

AT1G29040.4 unknown protein1.7e-6066.13Show/hide
Query:  DLRFRSYPLSNHHSSSSAHLICSLTR-------PRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNS
        +LR R  P     SSS    + S ++       P+ISR +KV A S+ME      +  V +  + MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNS
Subjt:  DLRFRSYPLSNHHSSSSAHLICSLTR-------PRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNS

Query:  IPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        IPAFRRGSIPGV+FGEMKLQIKLGVP SL Q LD++KVKS+FPYGKI+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  IPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGCTCCATAGTCCTAAATCTGCCATTTCCTTGGGCGACTGATCTTAGATTTCGTTCTTACCCTCTTTCTAATCATCATTCTTCTTCATCTGCCCATTTGATCTG
CTCTCTTACACGCCCTCGAATTTCGCGTCTTGTCAAAGTTACTGCTGCCTCGTCCATGGAGGTCGAGCAAGGTGGAAAATCTGCACCTGTTAGCAGCACAGCTTCGCCTA
TGAAGCTCTTGTTCGTTGAGATGGGTGTTGGCTACGATCAACATGGCCAAGATATCACGGCGGCTGCAATGCGAGCCTGCAGGGATGCCATATCTTCCAATTCGATTCCA
GCATTCCGTAGAGGTTCCATTCCTGGAGTCACATTTGGTGAGATGAAACTACAGATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGACGTTGAAAAAGTCAA
GTCCGTCTTCCCATATGGAAAGATTCTGAATGTTGAGGTCGTTGATGGTGGCTTAATATGCTCCAGTGGTGTGCACGTAGAAGAAATGGGAGACAAAAATGATGACTGTT
ACATAGTAAACGCTGCTGTTTATGTAGGCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGCTCCATAGTCCTAAATCTGCCATTTCCTTGGGCGACTGATCTTAGATTTCGTTCTTACCCTCTTTCTAATCATCATTCTTCTTCATCTGCCCATTTGATCTG
CTCTCTTACACGCCCTCGAATTTCGCGTCTTGTCAAAGTTACTGCTGCCTCGTCCATGGAGGTCGAGCAAGGTGGAAAATCTGCACCTGTTAGCAGCACAGCTTCGCCTA
TGAAGCTCTTGTTCGTTGAGATGGGTGTTGGCTACGATCAACATGGCCAAGATATCACGGCGGCTGCAATGCGAGCCTGCAGGGATGCCATATCTTCCAATTCGATTCCA
GCATTCCGTAGAGGTTCCATTCCTGGAGTCACATTTGGTGAGATGAAACTACAGATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGACGTTGAAAAAGTCAA
GTCCGTCTTCCCATATGGAAAGATTCTGAATGTTGAGGTCGTTGATGGTGGCTTAATATGCTCCAGTGGTGTGCACGTAGAAGAAATGGGAGACAAAAATGATGACTGTT
ACATAGTAAACGCTGCTGTTTATGTAGGCTACTAA
Protein sequenceShow/hide protein sequence
MRGSIVLNLPFPWATDLRFRSYPLSNHHSSSSAHLICSLTRPRISRLVKVTAASSMEVEQGGKSAPVSSTASPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIP
AFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDVEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY