CuGenDBv2

Gene ID	Spg012099
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	scaffold1:4070486..4072392
RNA-Seq Expression	Spg012099
Synteny	Spg012099
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0044183 - protein folding chaperone (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function)
InterPro domains	IPR038052 - Chaperonin-like RbcX superfamily IPR003435 - Chaperonin-like RbcX

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7026647.1 Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-85

86.63

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQ-FLCFNCSVMLCG
        MES ARILSPT FPSLFP PN NRSN +PVWPKK  ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQ  LCFNCS ML  
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQ-FLCFNCSVMLCG

Query:  FSLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDT
          LV ILVLVEQSYN EA+ ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D 
Subjt:  FSLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDT

Query:  EK
        EK
Subjt:  EK

XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]

9.0e-75

76.62

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        MESSARILSPTQFPSLF LPN NR N+ PV P KP+A K MRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EAY ELMEFLDRHSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]

4.7e-76

77.61

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EAY ELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

2.8e-76

78.11

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        MES ARILSPT FPSLFPLPN NRSN +PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EA+TELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D E
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]

2.1e-79

80.1

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        ME SARILS TQFPSLFPLPN NRSN+ PVWPKKPKA+KSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EAY ELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTRLMREYVTETSPSDTE
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMZ4 Uncharacterized protein

4.3e-75

76.62

Show/hide

Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        MESSARILSPTQFPSLF LPN NR N+ PV P KP+A K MRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EAY ELMEFLDRHSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A1S3B054 uncharacterized protein LOC103484635

2.3e-76

77.61

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EAY ELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A5D3CNU4 Chaperonin-like RBCX protein 1

2.3e-76

77.61

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        MESSARILSPTQFPS+F LPN NR N+ PV P KP+ASKSMRLHC+KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EAY ELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A6J1EFL9 chaperonin-like RBCX protein 1, chloroplastic

2.2e-74

76.62

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Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        MES ARILSPT FPSLFP PN NRSN +PVWPKK +ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EA+ ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D E
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

1.3e-76

78.11

Show/hide

Query:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF
        MES ARILSPT FPSLFPLPN NRSN +PVWPKKP+ASKS+RLHC+KMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGF

Query:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
                   SYN EA+TELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D E
Subjt:  SLVFILVLVEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

7.9e-50

59.38

Show/hide

Query:  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVL
        L +S  S L+P + K+P  S          K  R+  NKMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLE                         
Subjt:  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVL

Query:  VEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
           SYN EAY EL EFLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK VD+SNTRLMREYV ETS  +T+
Subjt:  VEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

5.6e-51

59.38

Show/hide

Query:  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVL
        L +S  S L+P + K+P  S          K  R+  NKMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLE                         
Subjt:  LPNSNRSNLSPVWPKKPKAS----------KSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVL

Query:  VEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE
           SYN EAY EL EFLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK VD+SNTRLMREYV ETS  +T+
Subjt:  VEQSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAATCATCTGCAAGGATTCTTTCCCCTACTCAATTCCCTTCTCTTTTCCCACTACCCAATTCGAACAGAAGCAATTTGTCTCCAGTTTGGCCAAAAAAGCCGAAAGC
CTCCAAGTCTATGCGCTTGCATTGCAATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCACCTGAAGCAAAGGCAGCCAAAAATCTGCACAATTTCTTCACGTATGTTG
CTGTTAGGATCGTGACTGCGCAGCTTGAGGTCGCTCTTCAATTTCTTTGTTTTAATTGTTCTGTCATGTTGTGTGGATTTTCATTGGTATTCATTCTTGTTCTGGTAGAG
CAGAGCTATAATCTAGAGGCGTACACAGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAGTTCCTGGCCAGTTTGATGCGGGAATCGTCGAGGCA
TAAGAGTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTGATGAATCCAACA
CGAGACTGATGAGGGAATATGTCACAGAGACAAGTCCATCGGATACTGAGAAGTGA

mRNA sequence

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Protein sequence

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MESSARILSPTQFPSLFPLPNSNRSNLSPVWPKKPKASKSMRLHCNKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQFLCFNCSVMLCGFSLVFILVLVE
QSYNLEAYTELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTRLMREYVTETSPSDTEK

Spg012099 (gene) of Sponge gourd (cylindrica) v1 genome