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Spg012100 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012100
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold1:1773151..1773765
RNA-Seq ExpressionSpg012100
SyntenySpg012100
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONH91217.1 hypothetical protein PRUPE_8G099500, partial [Prunus persica]7.6e-0538.16Show/hide
Query:  QSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA
        QS  +A    W+PPP GI+K+N++ A K G+   G G+V R+++G  + A     +        ELMA +EGL+FA
Subjt:  QSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]3.4e-0539.47Show/hide
Query:  QSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA
        QS  +A    W+PPP GI+K+NV+ A K G+   G G+V R+++G  + A     +        ELMA +EGL+FA
Subjt:  QSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA

XP_018832574.2 uncharacterized protein LOC109000195 [Juglans regia]7.6e-0535Show/hide
Query:  LNYVLSLEDLWTFVSNEVLESKAKSQSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKF
        +N+ LSL+   TF+  +       S +  R K   WKPPP G  K+NV+ A     G SG G+V R   G ++ A++   +    P  +EL+A+L GL+F
Subjt:  LNYVLSLEDLWTFVSNEVLESKAKSQSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKF

XP_021800463.1 uncharacterized protein LOC110744764 [Prunus avium]5.8e-0543.94Show/hide
Query:  WKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA
        W+PP +G+ K+NV+ AW +   +   G V R + GNL+G +S F+ +   P  VE  AILEGLK A
Subjt:  WKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA

XP_035539355.1 uncharacterized protein LOC118343962 [Juglans regia]7.6e-0535.35Show/hide
Query:  EVLESKAKSQSKVR--------------AKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA
        EV+++  KSQ + +              A+ + WKPPP G+ K+N +    EG+G +GFGLV R S GN++ AS  FS   +  P   L+A  +G  +A
Subjt:  EVLESKAKSQSKVR--------------AKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA

TrEMBL top hitse value%identityAlignment
A0A2I4FLN6 uncharacterized protein LOC1090001953.7e-0535Show/hide
Query:  LNYVLSLEDLWTFVSNEVLESKAKSQSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKF
        +N+ LSL+   TF+  +       S +  R K   WKPPP G  K+NV+ A     G SG G+V R   G ++ A++   +    P  +EL+A+L GL+F
Subjt:  LNYVLSLEDLWTFVSNEVLESKAKSQSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKF

A0A5E4FZN9 PREDICTED: retrotransposon1.7e-0539.47Show/hide
Query:  QSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA
        QS  +A    W+PPP GI+K+NV+ A K G+   G G+V R+++G  + A     +        ELMA +EGL+FA
Subjt:  QSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA

A0A6P5RF39 uncharacterized protein LOC1107447642.8e-0543.94Show/hide
Query:  WKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA
        W+PP +G+ K+NV+ AW +   +   G V R + GNL+G +S F+ +   P  VE  AILEGLK A
Subjt:  WKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA

A0A6P9DUT3 uncharacterized protein LOC1183439623.7e-0535.35Show/hide
Query:  EVLESKAKSQSKVR--------------AKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA
        EV+++  KSQ + +              A+ + WKPPP G+ K+N +    EG+G +GFGLV R S GN++ AS  FS   +  P   L+A  +G  +A
Subjt:  EVLESKAKSQSKVR--------------AKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLKFA

A0A803Q185 Uncharacterized protein3.7e-0539.74Show/hide
Query:  KAKSQSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLK
        +++ Q  +R +   WK P  G  K+NV+ + K G G SG G V R   G++L ASS   + E  P  +ELMAIL+G++
Subjt:  KAKSQSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELMAILEGLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATATTCCAAGTGGATTTTAACCATAACTTTGCTGATAGGTGGTTCGAGCTCAACTATGTCCTCTCATTGGAAGATCTTTGGACATTTGTTAGCAACGAAGTTCT
AGAATCAAAGGCGAAGAGTCAGAGCAAAGTAAGAGCGAAGTCATTTCCTTGGAAACCTCCACCCGATGGGATTTGGAAGGTCAATGTCAATGTGGCATGGAAAGAGGGTG
AGGGGAATTCCGGTTTTGGTCTGGTGTGCCGAAGTTCTGATGGCAATTTGTTGGGAGCTTCGTCAATTTTCTCGGAGATTGAAGTTCATCCTCCTATGGTAGAATTAATG
GCAATTTTGGAAGGTTTGAAGTTTGCAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATATTCCAAGTGGATTTTAACCATAACTTTGCTGATAGGTGGTTCGAGCTCAACTATGTCCTCTCATTGGAAGATCTTTGGACATTTGTTAGCAACGAAGTTCT
AGAATCAAAGGCGAAGAGTCAGAGCAAAGTAAGAGCGAAGTCATTTCCTTGGAAACCTCCACCCGATGGGATTTGGAAGGTCAATGTCAATGTGGCATGGAAAGAGGGTG
AGGGGAATTCCGGTTTTGGTCTGGTGTGCCGAAGTTCTGATGGCAATTTGTTGGGAGCTTCGTCAATTTTCTCGGAGATTGAAGTTCATCCTCCTATGGTAGAATTAATG
GCAATTTTGGAAGGTTTGAAGTTTGCAGAATAG
Protein sequenceShow/hide protein sequence
MDIFQVDFNHNFADRWFELNYVLSLEDLWTFVSNEVLESKAKSQSKVRAKSFPWKPPPDGIWKVNVNVAWKEGEGNSGFGLVCRSSDGNLLGASSIFSEIEVHPPMVELM
AILEGLKFAE