; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg012144 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012144
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCOPII coat assembly protein SEC16, putative
Genome locationscaffold1:11507716..11508156
RNA-Seq ExpressionSpg012144
SyntenySpg012144
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132713.1 uncharacterized protein LOC111005510 [Momordica charantia]1.4e-4876Show/hide
Query:  PPPSPSPSNLRRRN--------------GTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPAAVNSPSAASAANSGYEISIRNRLVKQAAWAYLRPM
        P PS SP  LRRRN              GTV PPPPPSP+DLRLLS KSSS SYTSLKDILPS AAVNSP+AASA NSGYEISIRNRLVKQAAWAYL+PM
Subjt:  PPPSPSPSNLRRRN--------------GTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPAAVNSPSAASAANSGYEISIRNRLVKQAAWAYLRPM

Query:  SASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        SASSYSAGPNFFHR  LR SA NPI+ CLGFIRG++IPA+VRVIR CICL
Subjt:  SASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

XP_022926106.1 uncharacterized protein LOC111433319 [Cucurbita moschata]8.6e-5176.25Show/hide
Query:  MADSAAQKTYPPPSPSPS--NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRLVK
        MA SAAQKTYPPPSPSPS  NL RR           NGT+SP PPPSP+DLRLL SKSSS SYTSLKDILPS A AVNSP+AAS ANSGYEI IRNRLVK
Subjt:  MADSAAQKTYPPPSPSPS--NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRLVK

Query:  QAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        QAAWAYL+PMSASSYSAGPN FH  WLRFS  NPIS CLGFIRG IIP+++RV R CICL
Subjt:  QAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

XP_022979075.1 uncharacterized protein LOC111478820 [Cucurbita maxima]4.5e-5276.88Show/hide
Query:  MADSAAQKTYPPPSPSPS--NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRLVK
        MA SAAQKTYPPPSPSPS  NL RR           NGT+SP PPPSP+DLRLL SKSSS SYTSLKDILPS A AVNSP+AAS ANSGYEI IRNRLVK
Subjt:  MADSAAQKTYPPPSPSPS--NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRLVK

Query:  QAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        QAAWAYL+PMSASSYSAGPN FHRFWLRFS  NPIS CLGFIRG IIP+++RV R CIC+
Subjt:  QAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

XP_023544532.1 uncharacterized protein LOC111804081 [Cucurbita pepo subsp. pepo]2.9e-5175.93Show/hide
Query:  MADSAAQKTYPPPSPSPS----NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRL
        MA SAAQKTYPPPSPSPS    NL RR           NGT+SP PPPSP+DLRLL SKSSS SYTSLKDILPS A AVNSP+AAS ANSGYEI IRNRL
Subjt:  MADSAAQKTYPPPSPSPS----NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRL

Query:  VKQAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        VKQAAWAYL+PMSASSYSAGPN FH FWLRFS  NPIS CLGFIRG IIP+++RV R CICL
Subjt:  VKQAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

XP_038883302.1 uncharacterized protein LOC120074291 [Benincasa hispida]2.6e-5578.88Show/hide
Query:  MADSAAQKTYPPPSPSPSNLRRR-----------NGT---VSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPS-PAAVNSPSAASAANSGYEISIRNRLV
        MA SAAQ TYPPPSPS SNLR R           NGT   VSPPPPPSP++LRLLS KSSS SYTSLKDILPS  AAVNSP+AAS ANSGYEISIRNRLV
Subjt:  MADSAAQKTYPPPSPSPSNLRRR-----------NGT---VSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPS-PAAVNSPSAASAANSGYEISIRNRLV

Query:  KQAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        KQAAWAYL+PMSASSYSAGPNFFHRFWLRFS  NPI GCLGFIRG+IIPA++RV RFCICL
Subjt:  KQAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

TrEMBL top hitse value%identityAlignment
A0A5A7SL81 Putative COPII coat assembly protein SEC161.6e-4773.08Show/hide
Query:  MADSAAQKTYPPPSPS--------PSNLRRRNGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILP--SPAAVNSPSAASAANSGYEISIRNRLVKQAAW
        MA SAAQ TYPPPSPS         S +   N  VSPPPPPSP++L LLS KSSS SYTSLKDILP  S AAVNSP+AAS ANS YEISIRNRLVKQAAW
Subjt:  MADSAAQKTYPPPSPS--------PSNLRRRNGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILP--SPAAVNSPSAASAANSGYEISIRNRLVKQAAW

Query:  AYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        AYL+PMSASSYSAGPNFFHRF LRFS  NPI  C GFI  SIIPA++R  RFCICL
Subjt:  AYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

A0A6J1BX34 uncharacterized protein LOC1110055106.6e-4976Show/hide
Query:  PPPSPSPSNLRRRN--------------GTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPAAVNSPSAASAANSGYEISIRNRLVKQAAWAYLRPM
        P PS SP  LRRRN              GTV PPPPPSP+DLRLLS KSSS SYTSLKDILPS AAVNSP+AASA NSGYEISIRNRLVKQAAWAYL+PM
Subjt:  PPPSPSPSNLRRRN--------------GTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPAAVNSPSAASAANSGYEISIRNRLVKQAAWAYLRPM

Query:  SASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        SASSYSAGPNFFHR  LR SA NPI+ CLGFIRG++IPA+VRVIR CICL
Subjt:  SASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

A0A6J1EDY2 uncharacterized protein LOC1114333194.1e-5176.25Show/hide
Query:  MADSAAQKTYPPPSPSPS--NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRLVK
        MA SAAQKTYPPPSPSPS  NL RR           NGT+SP PPPSP+DLRLL SKSSS SYTSLKDILPS A AVNSP+AAS ANSGYEI IRNRLVK
Subjt:  MADSAAQKTYPPPSPSPS--NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRLVK

Query:  QAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        QAAWAYL+PMSASSYSAGPN FH  WLRFS  NPIS CLGFIRG IIP+++RV R CICL
Subjt:  QAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

A0A6J1HF81 uncharacterized protein LOC1114634261.9e-4874.84Show/hide
Query:  MADSAAQKTYPPPSPSPSNLRRR----NGTVSPPP-----PP--SPMDLRLLSSKSSSLSYTSLKDILP--SPAAVNSPSAASAANSGYEISIRNRLVKQ
        MADSAAQKTY  PS   S L RR    +  + PPP     PP  SP+DLR+LSSKSSS SYTSLKDILP  S AA NSP+AAS ANSGYEISIRNRLVKQ
Subjt:  MADSAAQKTYPPPSPSPSNLRRR----NGTVSPPP-----PP--SPMDLRLLSSKSSSLSYTSLKDILP--SPAAVNSPSAASAANSGYEISIRNRLVKQ

Query:  AAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        AAWAYL+PMSASSYS G NFFHRFWLRFSA NPI+  LGFIRGSIIPA+VRVIRFCICL
Subjt:  AAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

A0A6J1IS66 uncharacterized protein LOC1114788202.2e-5276.88Show/hide
Query:  MADSAAQKTYPPPSPSPS--NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRLVK
        MA SAAQKTYPPPSPSPS  NL RR           NGT+SP PPPSP+DLRLL SKSSS SYTSLKDILPS A AVNSP+AAS ANSGYEI IRNRLVK
Subjt:  MADSAAQKTYPPPSPSPS--NLRRR-----------NGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPA-AVNSPSAASAANSGYEISIRNRLVK

Query:  QAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL
        QAAWAYL+PMSASSYSAGPN FHRFWLRFS  NPIS CLGFIRG IIP+++RV R CIC+
Subjt:  QAAWAYLRPMSASSYSAGPNFFHRFWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein2.7e-1049.5Show/hide
Query:  SNLRRRNGTVSPPPPPSPMDLRLLSSKSSSLS----YTSLKDILPSPA-AVNSPS---AASAANSGYEISIRNRLVKQAAWAYLRPMSASSYSAGPNFFH
        S L+RRNG VS       +DL L+S   SS      YTSLKDILPS +  V+SP+   A ++A SG  I+IRNRLVKQAA +YL+P S  + S+ P+F  
Subjt:  SNLRRRNGTVSPPPPPSPMDLRLLSSKSSSLS----YTSLKDILPSPA-AVNSPS---AASAANSGYEISIRNRLVKQAAWAYLRPMSASSYSAGPNFFH

Query:  R
        R
Subjt:  R

AT5G06280.1 unknown protein6.4e-1243.08Show/hide
Query:  PPSPSPSNLRRRNGTVS------PP--------PPPSPMDLRLLSSKSSS-LSYTSLKDILPSP--AAVNSPSAASA-----ANSGYEISIRNRLVKQAA
        PPS SP+   RR  ++S      PP         PPS  D  L+S K SS ++YTSL+DI+ SP  +++N PS   +     + +  +ISIRNRLVKQAA
Subjt:  PPSPSPSNLRRRNGTVS------PP--------PPPSPMDLRLLSSKSSS-LSYTSLKDILPSP--AAVNSPSAASA-----ANSGYEISIRNRLVKQAA

Query:  WAYLRP--MSASSYSAGPNFFHRFWLRFSA
         +YL+P  +++S  SAG  FF R WL  SA
Subjt:  WAYLRP--MSASSYSAGPNFFHRFWLRFSA

AT5G06280.3 unknown protein6.4e-1243.08Show/hide
Query:  PPSPSPSNLRRRNGTVS------PP--------PPPSPMDLRLLSSKSSS-LSYTSLKDILPSP--AAVNSPSAASA-----ANSGYEISIRNRLVKQAA
        PPS SP+   RR  ++S      PP         PPS  D  L+S K SS ++YTSL+DI+ SP  +++N PS   +     + +  +ISIRNRLVKQAA
Subjt:  PPSPSPSNLRRRNGTVS------PP--------PPPSPMDLRLLSSKSSS-LSYTSLKDILPSP--AAVNSPSAASA-----ANSGYEISIRNRLVKQAA

Query:  WAYLRP--MSASSYSAGPNFFHRFWLRFSA
         +YL+P  +++S  SAG  FF R WL  SA
Subjt:  WAYLRP--MSASSYSAGPNFFHRFWLRFSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATTCCGCCGCACAAAAAACCTATCCCCCGCCGTCGCCATCACCCTCAAATCTCCGCCGCCGAAACGGCACCGTTTCCCCTCCTCCACCGCCCTCGCCGATGGA
CTTGAGGCTCCTCTCCTCCAAGTCCTCTTCTCTATCCTACACCTCTCTCAAGGACATCCTCCCCTCCCCCGCCGCCGTCAACTCTCCCTCTGCCGCCTCCGCCGCTAACT
CCGGCTACGAAATCTCGATCCGTAACCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCGACCTATGTCCGCTTCTTCCTACTCCGCCGGCCCCAATTTTTTCCACCGT
TTCTGGCTCCGATTCTCTGCCGAAAATCCGATCTCCGGTTGTCTCGGATTCATCAGAGGTAGTATCATTCCGGCCGTAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATTCCGCCGCACAAAAAACCTATCCCCCGCCGTCGCCATCACCCTCAAATCTCCGCCGCCGAAACGGCACCGTTTCCCCTCCTCCACCGCCCTCGCCGATGGA
CTTGAGGCTCCTCTCCTCCAAGTCCTCTTCTCTATCCTACACCTCTCTCAAGGACATCCTCCCCTCCCCCGCCGCCGTCAACTCTCCCTCTGCCGCCTCCGCCGCTAACT
CCGGCTACGAAATCTCGATCCGTAACCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCGACCTATGTCCGCTTCTTCCTACTCCGCCGGCCCCAATTTTTTCCACCGT
TTCTGGCTCCGATTCTCTGCCGAAAATCCGATCTCCGGTTGTCTCGGATTCATCAGAGGTAGTATCATTCCGGCCGTAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTG
A
Protein sequenceShow/hide protein sequence
MADSAAQKTYPPPSPSPSNLRRRNGTVSPPPPPSPMDLRLLSSKSSSLSYTSLKDILPSPAAVNSPSAASAANSGYEISIRNRLVKQAAWAYLRPMSASSYSAGPNFFHR
FWLRFSAENPISGCLGFIRGSIIPAVVRVIRFCICL