CuGenDBv2

Gene ID	Spg012147
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein SCO1 homolog 1, mitochondrial
Genome location	scaffold1:15579387..15583316
RNA-Seq Expression	Spg012147
Synteny	Spg012147
Gene Ontology terms	GO:0006878 - cellular copper ion homeostasis (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0033617 - mitochondrial respiratory chain complex IV assembly (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005507 - copper ion binding (molecular function) GO:0016531 - copper chaperone activity (molecular function)
InterPro domains	IPR003782 - Copper chaperone SCO1/SenC

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595394.1 Protein SCO1-like 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-56

87.86

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Query:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS
        MA+IISRSAKHFH+ANR LSLHRLRL  PSSSSSVLAGANLHD A P L SGLGIN+LA YMRRLYGTTSTT DSQ+ ASE+SAESNSSEGD+SGKSNQS
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS

Query:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        QD GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
Subjt:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

KAG7027404.1 Protein SCO1-like 1, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-56

87.14

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Query:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS
        MA+IISRSAKHFH+ANR LSLHRLRL  PSSSSSVLAGANLHD A P L SGLGIN+LA YMRRLYGTTSTT DSQ+ AS++SAESNSSEGD+SGKSNQS
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS

Query:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        QD GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
Subjt:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

XP_022931851.1 protein SCO1 homolog 1, mitochondrial [Cucurbita moschata]

1.8e-55

87.14

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Query:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS
        MA+IISRSAKHFH+ANR LSLHRLRL  PSSSSSVLAGANLHD A P L SGLGIN+LA YMRRLYGTTSTT DSQ+ AS +SAESNSSEGD+SGKSNQS
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS

Query:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        QD GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
Subjt:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

XP_022966624.1 protein SCO1 homolog 1, mitochondrial [Cucurbita maxima]

5.2e-55

86.43

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Query:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS
        MA+IISR+AKHFH+ANR LSLHRLRL  PSSSSSVLAGANLHD A P L SGLGIN+LA YMRRLYGTTSTT DSQ+ ASE+SAESNSSEGD+SGKSNQS
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS

Query:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        QD GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKK HIE
Subjt:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

XP_023517326.1 protein SCO1 homolog 1, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo]

8.9e-55

86.43

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Query:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS
        MA+IISRSAKHFH+ANR LSLHRLRL  PSSS SVLAGANLHD A P L SGLGIN+LA YMRRLYGTTSTT DSQ+ ASE+SAESNSSEGD+SGKSNQS
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS

Query:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        QD GKPVRGGPVSWLSFLLLVATGAGLVFYYD EKKRHIE
Subjt:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXK5 Thioredoxin domain-containing protein

1.9e-66

80.92

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Query:  SPSSLQIPAARVCEGHFHISGFYESLQLTMATIISRSAKHFHYANRSLSLHRLRLH-----PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYG
        SP SLQIPA RV EGHFH+SGFYE+L+ TMATIISRSAKH HYAN S SLHR+RLH     PS+SSSVLAGAN HD A P L SG G+N LA YMRRLY 
Subjt:  SPSSLQIPAARVCEGHFHISGFYESLQLTMATIISRSAKHFHYANRSLSLHRLRLH-----PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYG

Query:  TTSTTVDSQSPASERSAESNSSEGDKSGKSNQSQDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        TTSTT DSQS ASE+SAESNSSEGDKSG SN+ QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
Subjt:  TTSTTVDSQSPASERSAESNSSEGDKSGKSNQSQDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

A0A6J1DB88 protein SCO1 homolog 1, mitochondrial isoform X1

1.2e-54

84.72

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Query:  MATIISRSAKHFHYANRSLSLHRLRLHP-----SSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGK
        MATIISR AKHFHYANR LSLHRL L       S SSSV+AGANLHDR  PLLQSGLGIN+LAMYMRRLYGT S T DSQSPASERS ESNSSEGD SGK
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLHP-----SSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGK

Query:  SNQSQDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        SNQS DAGK VRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
Subjt:  SNQSQDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

A0A6J1DER9 protein SCO1 homolog 1, mitochondrial isoform X2

1.2e-54

84.72

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Query:  MATIISRSAKHFHYANRSLSLHRLRLHP-----SSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGK
        MATIISR AKHFHYANR LSLHRL L       S SSSV+AGANLHDR  PLLQSGLGIN+LAMYMRRLYGT S T DSQSPASERS ESNSSEGD SGK
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLHP-----SSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGK

Query:  SNQSQDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        SNQS DAGK VRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
Subjt:  SNQSQDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

A0A6J1EUS6 protein SCO1 homolog 1, mitochondrial

8.6e-56

87.14

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Query:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS
        MA+IISRSAKHFH+ANR LSLHRLRL  PSSSSSVLAGANLHD A P L SGLGIN+LA YMRRLYGTTSTT DSQ+ AS +SAESNSSEGD+SGKSNQS
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS

Query:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        QD GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
Subjt:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

A0A6J1HUB9 protein SCO1 homolog 1, mitochondrial

2.5e-55

86.43

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Query:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS
        MA+IISR+AKHFH+ANR LSLHRLRL  PSSSSSVLAGANLHD A P L SGLGIN+LA YMRRLYGTTSTT DSQ+ ASE+SAESNSSEGD+SGKSNQS
Subjt:  MATIISRSAKHFHYANRSLSLHRLRLH-PSSSSSVLAGANLHDRALPLLQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQS

Query:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        QD GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKK HIE
Subjt:  QDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

SwissProt top hits

e value

%identity

Alignment

Q8VYP0 Protein SCO1 homolog 1, mitochondrial

1.5e-12

38.85

Show/hide

Query:  MATIISRSAKHFHYANRSLSLHR-------LRLHPSSSSSVLAGANLH-DRALP--LLQSGLGINHLAMYMRRLYGTTSTTVDS-------QSPASERSA
        MA+ + R+A       RS+ L R       L    S S + ++ A  H D +LP        GI  L M  R L  T+++   S       ++ +SE++ 
Subjt:  MATIISRSAKHFHYANRSLSLHR-------LRLHPSSSSSVLAGANLH-DRALP--LLQSGLGINHLAMYMRRLYGTTSTTVDS-------QSPASERSA

Query:  ESNSSEGDKSGKSNQSQDA-GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        +S  SE    G  ++++ A GK VRGGPVSW+SF LL ATGAGLV+YYD +KKRHIE
Subjt:  ESNSSEGDKSGKSNQSQDA-GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

Arabidopsis top hits

e value

%identity

Alignment

AT3G08950.1 electron transport SCO1/SenC family protein

1.1e-13

38.85

Show/hide

Query:  MATIISRSAKHFHYANRSLSLHR-------LRLHPSSSSSVLAGANLH-DRALP--LLQSGLGINHLAMYMRRLYGTTSTTVDS-------QSPASERSA
        MA+ + R+A       RS+ L R       L    S S + ++ A  H D +LP        GI  L M  R L  T+++   S       ++ +SE++ 
Subjt:  MATIISRSAKHFHYANRSLSLHR-------LRLHPSSSSSVLAGANLH-DRALP--LLQSGLGINHLAMYMRRLYGTTSTTVDS-------QSPASERSA

Query:  ESNSSEGDKSGKSNQSQDA-GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE
        +S  SE    G  ++++ A GK VRGGPVSW+SF LL ATGAGLV+YYD +KKRHIE
Subjt:  ESNSSEGDKSGKSNQSQDA-GKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIE

Sequences

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CDS sequence

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ATGGATCCGGCCCATAGAAAGCCCATTCAGCCTGGCCCACGGTCTTGGTTAAATCTCGCTCCAATTGCAAAGTCGGGTCGAAAAGTTCTACCTATAAATAGATCGCCGTC
TTCCCTCCAAATTCCGGCAGCGAGGGTTTGCGAAGGACATTTCCACATTTCAGGGTTTTACGAGAGTTTACAGTTGACAATGGCGACCATTATTTCTAGGAGTGCGAAGC
ATTTTCATTACGCAAATCGCTCTCTCTCTTTACACCGGCTGAGGCTGCATCCTTCGTCTTCGTCTTCCGTTCTAGCGGGCGCGAATCTTCACGATCGAGCTCTTCCCCTT
CTTCAGTCGGGGCTTGGAATCAACCATTTAGCTATGTATATGAGGCGGCTGTATGGTACAACTTCTACTACTGTTGATTCTCAAAGCCCAGCCTCGGAGAGATCGGCAGA
GTCCAATTCTAGTGAAGGGGATAAATCGGGGAAATCAAATCAGAGCCAGGATGCTGGAAAACCTGTTCGTGGTGGGCCGGTTTCATGGTTGAGTTTTCTTTTGCTGGTTG
CCACTGGAGCGGGATTGGTTTTCTATTACGACAGGGAAAAGAAACGTCATATTGAAGGTAGACTACTATGTGTTTCCTACCTAGGTGCTTCTCGTGATTTTGTACTGTTG
CTGTTGGAGGCTAACTACTAA

mRNA sequence

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Protein sequence

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MDPAHRKPIQPGPRSWLNLAPIAKSGRKVLPINRSPSSLQIPAARVCEGHFHISGFYESLQLTMATIISRSAKHFHYANRSLSLHRLRLHPSSSSSVLAGANLHDRALPL
LQSGLGINHLAMYMRRLYGTTSTTVDSQSPASERSAESNSSEGDKSGKSNQSQDAGKPVRGGPVSWLSFLLLVATGAGLVFYYDREKKRHIEGRLLCVSYLGASRDFVLL
LLEANY

Spg012147 (gene) of Sponge gourd (cylindrica) v1 genome