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Spg012202 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012202
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold1:11923193..11923465
RNA-Seq ExpressionSpg012202
SyntenySpg012202
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647420.1 hypothetical protein Csa_003059 [Cucumis sativus]1.3e-2880.49Show/hide
Query:  SSAKVKVLALV-LVLSCSLWCCKSQDLM--GCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        S +K KV++LV LVLSC +WCCKS +L+   CEEIYVV EGETLQ+ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
Subjt:  SSAKVKVLALV-LVLSCSLWCCKSQDLM--GCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

KAF3441687.1 hypothetical protein FNV43_RR15602 [Rhamnella rubrinervis]3.7e-2062.89Show/hide
Query:  MAER-SSAKVKVLALVLVLSCSLWCCKSQD--------------LMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH
        MAE+ SS    +LA++LVLS    CC+S +                 C+EIYVVREGETLQTISEKCGDPFIVEENPHI DPDDVFPGLVIKITPF+
Subjt:  MAER-SSAKVKVLALVLVLSCSLWCCKSQD--------------LMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH

KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2676.47Show/hide
Query:  MAERSSAKVKVLALVLVLS-CSLWCCKSQD-LMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        MA+RSS++ + L LVLVLS   +WCC SQ+ LMGC+EIYVVREGETLQ+ISEKCGDPFI E NPHIND DDVFPGLVIKITPF H
Subjt:  MAERSSAKVKVLALVLVLS-CSLWCCKSQD-LMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

XP_019179717.1 PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil]6.3e-20100Show/hide
Query:  CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
Subjt:  CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

XP_022744694.1 uncharacterized protein LOC111295462 [Durio zibethinus]4.8e-2060.61Show/hide
Query:  MAERSSAKVKV-LALVLVLSCSLWCCK---SQDLMG------------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        MAE+ S    + +A++L+LSC   CC+    +D  G            C+EIYVVREGETLQTISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF++
Subjt:  MAERSSAKVKV-LALVLVLSCSLWCCK---SQDLMG------------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

TrEMBL top hitse value%identityAlignment
A0A067F127 LysM domain-containing protein5.2e-2065.48Show/hide
Query:  LALVLVLSCSLWCCKSQDLMG--------------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        +A++LVLS    CC+S D  G              C+EIYVVREGETL TISEKCGDP+IVE+NPHINDPDDVFPGLVIKITPF
Subjt:  LALVLVLSCSLWCCKSQDLMG--------------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

A0A4D8YJQ4 LysM domain-containing protein8.9e-2067.53Show/hide
Query:  ALVLVLSCSLWCCK--------SQDLMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        AL+L +   L CC+        S    GC+EIYVVR+GETL TISEKCGDPFIVEENPHI+DPDDVFPGLVIKITP+
Subjt:  ALVLVLSCSLWCCK--------SQDLMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

A0A6P5YVX7 uncharacterized protein LOC1112954622.3e-2060.61Show/hide
Query:  MAERSSAKVKV-LALVLVLSCSLWCCK---SQDLMG------------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH
        MAE+ S    + +A++L+LSC   CC+    +D  G            C+EIYVVREGETLQTISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF++
Subjt:  MAERSSAKVKV-LALVLVLSCSLWCCK---SQDLMG------------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHH

V4SRY3 LysM domain-containing protein6.8e-2066.67Show/hide
Query:  LALVLVLSCSLWCCKSQD---LMG-----------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        +A++LVLS    CC+S D    MG           C+EIYVVREGETL TISEKCGDP+IVE+NPHINDPDDVFPGLVIKITPF
Subjt:  LALVLVLSCSLWCCKSQD---LMG-----------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

W9RNZ8 LysM domain-containing protein6.8e-2061.46Show/hide
Query:  MAERSSAKVKV-LALVLVLSCSLWCCKSQD----LMG----------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
        MAER+S    + LA++LVLS    CC+S +    +MG          C+EIYVVREGETLQTI+E+CGDP+IVEENPHI+DPDDVFPGLVIKITP+
Subjt:  MAERSSAKVKV-LALVLVLSCSLWCCKSQD----LMG----------CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein4.8e-1879.17Show/hide
Query:  CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP
        C+EIY V+EGETLQTISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Subjt:  CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITP

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein5.7e-1966.67Show/hide
Query:  SCSLWCCKSQDLMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKI
        +C +W  K      CEE+YVV EG+TL +ISEKCGDPFIVE NPHI+DPDDVFPGL+IK+
Subjt:  SCSLWCCKSQDLMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein8.7e-2080Show/hide
Query:  CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH
        CEEIY+V EGETL TI +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Subjt:  CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGAGATCATCAGCAAAAGTGAAGGTTTTGGCTCTGGTTTTGGTTTTGAGCTGCTCATTATGGTGTTGCAAGAGCCAAGATTTGATGGGTTGTGAAGAGATATA
CGTTGTTCGTGAAGGAGAAACTTTGCAGACAATTAGTGAAAAGTGTGGAGATCCTTTTATTGTTGAAGAGAATCCTCATATCAATGATCCAGATGATGTTTTTCCTGGTT
TGGTCATCAAGATCACTCCTTTTCACCATATTGTGGAAGGATTTCTCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAGAGATCATCAGCAAAAGTGAAGGTTTTGGCTCTGGTTTTGGTTTTGAGCTGCTCATTATGGTGTTGCAAGAGCCAAGATTTGATGGGTTGTGAAGAGATATA
CGTTGTTCGTGAAGGAGAAACTTTGCAGACAATTAGTGAAAAGTGTGGAGATCCTTTTATTGTTGAAGAGAATCCTCATATCAATGATCCAGATGATGTTTTTCCTGGTT
TGGTCATCAAGATCACTCCTTTTCACCATATTGTGGAAGGATTTCTCAGTTGA
Protein sequenceShow/hide protein sequence
MAERSSAKVKVLALVLVLSCSLWCCKSQDLMGCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHIVEGFLS