CuGenDBv2

Gene ID	Spg012260
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Small nuclear ribonucleoprotein G
Genome location	scaffold1:11766393..11767902
RNA-Seq Expression	Spg012260
Synteny	Spg012260
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0043186 - P granule (cellular component) GO:0071004 - U2-type prespliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR044641 - Sm-like protein Lsm7/SmG IPR034098 - Small nuclear ribonucleoprotein G IPR010920 - LSM domain superfamily IPR001163 - LSM domain, eukaryotic/archaea-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7820147.1 putative small nuclear ribonucleoprotein G [Senna tora]

3.9e-32

90.36

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANR+++GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]

3.9e-32

92.77

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_011094310.1 probable small nuclear ribonucleoprotein G [Sesamum indicum]

3.9e-32

92.77

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_022132404.1 probable small nuclear ribonucleoprotein G [Momordica charantia]

7.8e-33

93.98

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_028784792.1 probable small nuclear ribonucleoprotein G [Prosopis alba]

1.7e-32

91.57

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANR+++GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHH9 Small nuclear ribonucleoprotein G

1.9e-32

92.77

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A2G9GPP4 Small nuclear ribonucleoprotein G

1.9e-32

92.77

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G

1.9e-32

92.77

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A6I9U280 Small nuclear ribonucleoprotein G

1.9e-32

92.77

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANR+VVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A6J1BSY9 Small nuclear ribonucleoprotein G

3.8e-33

93.98

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        MSRSGQPPDLKKYMDKKLQ   +KLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

SwissProt top hits

e value

%identity

Alignment

O82221 Probable small nuclear ribonucleoprotein G

6.2e-33

87.8

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        MSRSGQPPDLKKYMDKKLQ   +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

P24715 Probable small nuclear ribonucleoprotein G

5.4e-29

84.81

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV
        MS SGQPP LKKYMDK+LQ   + L ANR++VGTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPV
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV

P62308 Small nuclear ribonucleoprotein G

5.8e-15

60.81

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Query:  PPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL    LKLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G

5.8e-15

60.81

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Query:  PPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL    LKLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q9VXE0 Probable small nuclear ribonucleoprotein G

5.3e-16

62.16

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Query:  PPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV
        PP++KKYMDK++   +LKLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Subjt:  PPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G03870.1 Small nuclear ribonucleoprotein family protein

1.1e-05

37.84

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Query:  DLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q   +KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein

1.1e-05

37.84

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Query:  DLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q   +KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G

4.4e-34

87.8

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        MSRSGQPPDLKKYMDKKLQ   +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

AT2G23930.2 probable small nuclear ribonucleoprotein G

4.4e-26

85.51

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Query:  MDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        MDKKLQ   +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  MDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

AT3G11500.1 Small nuclear ribonucleoprotein family protein

5.8e-34

87.8

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Query:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        MSRSGQPPDLKKYMDKKLQ   +KLNANR+VVGTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

Sequences

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CDS sequence

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ATGAGTAGGTCAGGCCAGCCTCCAGATCTCAAAAAATACATGGACAAAAAGCTTCAGAGTAAGATCTTAAAACTCAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGG
GTTTGACCAATTTATGAATCTAGTGGTTGACAACACTGTGGAAGTGAATGGCAATGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTGGTCACTGTTG
AAGCACTTGAACCTGTAAACAGGACGCAGTGA

mRNA sequence

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Protein sequence

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MSRSGQPPDLKKYMDKKLQSKILKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

Spg012260 (gene) of Sponge gourd (cylindrica) v1 genome