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Spg012315 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012315
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:14868476..14873841
RNA-Seq ExpressionSpg012315
SyntenySpg012315
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-1354.17Show/hide
Query:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]9.4e-0835.77Show/hide
Query:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKR
        E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   PQG+   +E+++EGW +V  RKK++    Q+ESR Y++ +R
Subjt:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEED
          K+Q+ K KKK+ + K V  ED
Subjt:  KVKSQRKKGKKKSRRSKPVVEED

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-1354.17Show/hide
Query:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.1e-1354.17Show/hide
Query:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]9.4e-0835.77Show/hide
Query:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKR
        E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   PQG+   +E+++EGW +V  RKK++    Q+ESR Y++ +R
Subjt:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEED
          K+Q+ K KKK+ + K V  ED
Subjt:  KVKSQRKKGKKKSRRSKPVVEED

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.1e-1354.17Show/hide
Query:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]9.4e-0835.77Show/hide
Query:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKR
        E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   PQG+   +E+++EGW +V  RKK++    Q+ESR Y++ +R
Subjt:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEED
          K+Q+ K KKK+ + K V  ED
Subjt:  KVKSQRKKGKKKSRRSKPVVEED

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.1e-1354.17Show/hide
Query:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H4.7e-1343.36Show/hide
Query:  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTL-NPDVMSVMMADVD-QDERMAEMERKLNLLMKAVDERDLEIA
        N  +RS+ I+  ED  P  VA  I + I +  K  + +K+NP  +     S++  + +  P++MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ERD EIA
Subjt:  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTL-NPDVMSVMMADVD-QDERMAEMERKLNLLMKAVDERDLEIA

Query:  YLKNQLQSREVAE
         LKN ++SR+ AE
Subjt:  YLKNQLQSREVAE

A0A5A7TZU9 Ribonuclease H5.4e-0935.71Show/hide
Query:  MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTLDPVVVRFQKEATMR------GPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDS
        +++K+ L +  V + +     +++  +   +  LIQFG+L+PVV+    E          GP+ +   V++  EGWTLV RRKK+KQS++QKES  YR  
Subjt:  MERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTLDPVVVRFQKEATMR------GPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDS

Query:  KRKVKSQRKKGKKKSRRSKPVVEEDD
        + K KSQR+  +K  R+  P++EE +
Subjt:  KRKVKSQRKKGKKKSRRSKPVVEEDD

A0A5A7UG56 Ty3-gypsy retrotransposon protein9.5e-1436.56Show/hide
Query:  HEGNYVPSKVDTTTSSILI---LKVKPGYRAVVGENF-------EARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTL
        H G+ + SK  T+ +   I    K++P ++    +N        +ARS+ I I+E      VA  I K + ES K  + +K+NPL+++    S + K   
Subjt:  HEGNYVPSKVDTTTSSILI---LKVKPGYRAVVGENF-------EARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTL

Query:  NPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTLDPVVVRFQK-EATMRGPQGKYNSVED
        +PDVMSV+MAD+  +  M EMERK+N LMKAV+ERD EI  L+ Q+++RE  E  Q     PVV    K +  ++  Q +  SV D
Subjt:  NPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTLDPVVVRFQK-EATMRGPQGKYNSVED

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class2.1e-1344.25Show/hide
Query:  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTS-KQPKDTLNPDVMSVMMADVD-QDERMAEMERKLNLLMKAVDERDLEIA
        N  +RS+ I+  ED  P  VA  I + I +  KD + +K+NP  +     S +  ++   P++MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ERD EIA
Subjt:  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTS-KQPKDTLNPDVMSVMMADVD-QDERMAEMERKLNLLMKAVDERDLEIA

Query:  YLKNQLQSREVAE
         LKN ++SR+ AE
Subjt:  YLKNQLQSREVAE

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.1e-1345.38Show/hide
Query:  AVVGENFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDL
        A  G    +RS+ I  ++D     VA  I K + ES K  + +K+NPL+++   +S + K   +PDVMSVMMAD+  +  MAEMERK+N LMKAV+ERD 
Subjt:  AVVGENFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDL

Query:  EIAYLKNQLQSREVAELIQ
        EI  L+ Q+++RE AE  Q
Subjt:  EIAYLKNQLQSREVAELIQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.0e-0447.3Show/hide
Query:  QKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKRKVKSQRKKGKKKSRRSKPVVEEDDD
        ++E T    Q K   +E+++EGWT+V RRKK+K +  QKESRLY + +R  K+Q+ K KKK+R+ K V E+D D
Subjt:  QKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKRKVKSQRKKGKKKSRRSKPVVEEDDD

A0A5D3BY54 Ty3-gypsy retrotransposon protein3.6e-1343.36Show/hide
Query:  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTL-NPDVMSVMMADVDQDE-RMAEMERKLNLLMKAVDERDLEIA
        N  +RS+ I+  ED  P  VA  I + I +  K  + +K+NP  +    +SK   + + +P++MSVM+ +VD  E RMAE+E+K+N+LMK V+ERD EIA
Subjt:  NFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTL-NPDVMSVMMADVDQDE-RMAEMERKLNLLMKAVDERDLEIA

Query:  YLKNQLQSREVAE
        +LKN ++SR+ AE
Subjt:  YLKNQLQSREVAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCTGCACGAGGGCAATTATGTCCCTTCGAAGGTCGACACTACTACATCCTCGATCCTAATCCTAAAGGTAAAGCCCGGGTATAGAGCTGTGGTTGGGGAGAATTT
TGAAGCTCGAAGCCAGAGAATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCA
AAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGA
ATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATT
AATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGGCTGGA
CCCTTGTCGTTCGCCGCAAAAAGCAAAAGCAAAGTTACGCACAGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAG
AAGTCCAGGAGGTCAAAGCCTGTCGTGGAGGAAGATGATGACGTCCTCGCTAGCTCCTCGGGAGTGGCGGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGT
GGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGA
AGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAAGTGAAGCTGATGACGACCGTGGT
GACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCCTGCACGAGGGCAATTATGTCCCTTCGAAGGTCGACACTACTACATCCTCGATCCTAATCCTAAAGGTAAAGCCCGGGTATAGAGCTGTGGTTGGGGAGAATTT
TGAAGCTCGAAGCCAGAGAATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCA
AAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGA
ATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATT
AATTCAATTTGGGACCCTTGATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGGCTGGA
CCCTTGTCGTTCGCCGCAAAAAGCAAAAGCAAAGTTACGCACAGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAG
AAGTCCAGGAGGTCAAAGCCTGTCGTGGAGGAAGATGATGACGTCCTCGCTAGCTCCTCGGGAGTGGCGGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGT
GGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGA
AGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAAGTGAAGCTGATGACGACCGTGGT
GACCACCCCTGCAGGAAACTACAGTCATCAAAGTGA
Protein sequenceShow/hide protein sequence
MRLHEGNYVPSKVDTTTSSILILKVKPGYRAVVGENFEARSQRIEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDER
MAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRRKKQKQSYAQKESRLYRDSKRKVKSQRKKGKK
KSRRSKPVVEEDDDVLASSSGVAAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPVGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSHQSDWSRQVVKSLQSEADDDRG
DHPCRKLQSSK