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Spg012361 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012361
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase RFWD3 isoform X1
Genome locationscaffold1:12816422..12817646
RNA-Seq ExpressionSpg012361
SyntenySpg012361
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0036297 - interstrand cross-link repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022962839.1 E3 ubiquitin-protein ligase RFWD3 isoform X3 [Cucurbita moschata]3.9e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRTEGGE SSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
XP_022972717.1 E3 ubiquitin-protein ligase RFWD3 isoform X1 [Cucurbita maxima]3.0e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRT+GGEASSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
XP_022972718.1 E3 ubiquitin-protein ligase RFWD3 isoform X2 [Cucurbita maxima]3.0e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRT+GGEASSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
XP_022972719.1 E3 ubiquitin-protein ligase RFWD3 isoform X3 [Cucurbita maxima]3.0e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRT+GGEASSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
XP_023518105.1 LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RFWD3 [Cucurbita pepo subsp. pepo]3.0e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRTEGGEASSSNGVGS+EISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
TrEMBL top hitse value%identityAlignment
A0A6J1HDN7 E3 ubiquitin-protein ligase RFWD3 isoform X11.9e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRTEGGE SSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
A0A6J1HFZ1 E3 ubiquitin-protein ligase RFWD3 isoform X21.9e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRTEGGE SSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
A0A6J1I5M2 E3 ubiquitin-protein ligase RFWD3 isoform X11.4e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRT+GGEASSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
A0A6J1IAX3 E3 ubiquitin-protein ligase RFWD3 isoform X21.4e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRT+GGEASSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
A0A6J1ICD9 E3 ubiquitin-protein ligase RFWD3 isoform X31.4e-2685.71Show/hide
Query:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
        +G AEE+AD V+EAQSPRASQTGPSRS   RVSFWVEEEEDKRRRT+GGEASSSNGVGSVEISQGNEWNRNEID +F
Subjt:  KGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGCGAAGAAACAGTCGAAGGGGCTTGCGGAAGAGGATGCTGATTTTGTTCTTGAGGCGCAATCGCCTAGGGCTTCACAAACGGGCCCTTCGAGATCTGCCGCAGA
TAGGGTTTCGTTTTGGGTCGAGGAAGAGGAAGACAAGAGGAGAAGAACCGAGGGTGGAGAAGCGAGTTCTTCAAATGGTGTTGGAAGTGTGGAAATTTCACAGGGGAATG
AGTGGAATCGGAATGAAATCGACGTTGTCTTCCTTGTGGGCACCTATATGGCATGTCTTGGATCAATAGATGGCTGCGACAACGTAAAATTGCAGGGAAGGTATGTGCTT
TTAAGTTTTAAGGAGGAAGCTAATCTTGATAAGGAGTCTGCTTGTTTTACAGAGAATTCAGTCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGGCGAAGAAACAGTCGAAGGGGCTTGCGGAAGAGGATGCTGATTTTGTTCTTGAGGCGCAATCGCCTAGGGCTTCACAAACGGGCCCTTCGAGATCTGCCGCAGA
TAGGGTTTCGTTTTGGGTCGAGGAAGAGGAAGACAAGAGGAGAAGAACCGAGGGTGGAGAAGCGAGTTCTTCAAATGGTGTTGGAAGTGTGGAAATTTCACAGGGGAATG
AGTGGAATCGGAATGAAATCGACGTTGTCTTCCTTGTGGGCACCTATATGGCATGTCTTGGATCAATAGATGGCTGCGACAACGTAAAATTGCAGGGAAGGTATGTGCTT
TTAAGTTTTAAGGAGGAAGCTAATCTTGATAAGGAGTCTGCTTGTTTTACAGAGAATTCAGTCACTTGA
Protein sequenceShow/hide protein sequence
MTAKKQSKGLAEEDADFVLEAQSPRASQTGPSRSAADRVSFWVEEEEDKRRRTEGGEASSSNGVGSVEISQGNEWNRNEIDVVFLVGTYMACLGSIDGCDNVKLQGRYVL
LSFKEEANLDKESACFTENSVT