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Spg012374 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012374
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionricin B-like lectin R40G3
Genome locationscaffold1:17147529..17149541
RNA-Seq ExpressionSpg012374
SyntenySpg012374
Gene Ontology termsGO:0042742 - defense response to bacterium (biological process)
GO:0090332 - stomatal closure (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030246 - carbohydrate binding (molecular function)
InterPro domainsIPR035992 - Ricin B-like lectins
IPR040249 - Ricin B-like lectin EULS3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147526.1 ricin B-like lectin R40G3 [Cucumis sativus]5.5e-3590.79Show/hide
Query:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        VQL RY P+ VDESVLWTQSKEFGEGYRAIRMVNN+HLNVDAFHGD YSGG+HDGTHIVLWKWKEGENQLWKIVPY
Subjt:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

XP_008441967.1 PREDICTED: extensin [Cucumis melo]3.2e-3590.79Show/hide
Query:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        VQL RY+P+ VDESVLWTQSKEFGEGYRAIRMVNN+HLNVDAFHGD YSGG+HDGTHIVLWKWKEGENQLWKIVPY
Subjt:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

XP_022156229.1 ricin B-like lectin R40G3 [Momordica charantia]3.6e-3486.25Show/hide
Query:  NTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        +T  VQLI YNP+ +DESVLWTQSKEFGEGYRAIRMVNNIHLNVDA+HGD YSGGVHDGT IVLWKWKEG+NQLWKIVPY
Subjt:  NTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

XP_022978259.1 ricin B-like lectin R40G3 [Cucurbita maxima]8.0e-3484.34Show/hide
Query:  NIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        +I +T  VQLI+YNPD VDESVLWTQSK+FGEG+R+IRMVNNI LNVDAFHGD YSGGVHDGT IVLWKWKEGENQLWKIVPY
Subjt:  NIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

XP_038881782.1 ricin B-like lectin R40G3 [Benincasa hispida]4.2e-3586.75Show/hide
Query:  NIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        +I  T  VQLI Y+P+ VDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGD +SGGVHDGTHIVLWKWKEGENQLWKIVPY
Subjt:  NIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

TrEMBL top hitse value%identityAlignment
A0A0A0KYQ4 Uncharacterized protein2.7e-3590.79Show/hide
Query:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        VQL RY P+ VDESVLWTQSKEFGEGYRAIRMVNN+HLNVDAFHGD YSGG+HDGTHIVLWKWKEGENQLWKIVPY
Subjt:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

A0A1S3B4K8 extensin1.6e-3590.79Show/hide
Query:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        VQL RY+P+ VDESVLWTQSKEFGEGYRAIRMVNN+HLNVDAFHGD YSGG+HDGTHIVLWKWKEGENQLWKIVPY
Subjt:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

A0A6J1DST7 ricin B-like lectin R40G31.7e-3486.25Show/hide
Query:  NTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        +T  VQLI YNP+ +DESVLWTQSKEFGEGYRAIRMVNNIHLNVDA+HGD YSGGVHDGT IVLWKWKEG+NQLWKIVPY
Subjt:  NTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

A0A6J1GEM1 ricin B-like lectin R40G31.5e-3381.93Show/hide
Query:  NIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        ++ +T  VQLI+YNPD VDESVLWTQS++FGEG+R+IRMVNNI LNVDAFHGD YSGGVHDGT IVLWKWKEGENQLWKIVPY
Subjt:  NIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

A0A6J1ITL7 ricin B-like lectin R40G33.9e-3484.34Show/hide
Query:  NIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        +I +T  VQLI+YNPD VDESVLWTQSK+FGEG+R+IRMVNNI LNVDAFHGD YSGGVHDGT IVLWKWKEGENQLWKIVPY
Subjt:  NIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

SwissProt top hitse value%identityAlignment
Q10M12 Ricin B-like lectin R40C17.1e-2564.47Show/hide
Query:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        V+L+ YNP   DESVLWT+S++ G G+R IRMVNNI+LN DA HGD   GGV DGT + LWKW EG+NQ WKIVP+
Subjt:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

Q6Z4N4 Ricin B-like lectin R40G35.2e-2869.74Show/hide
Query:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        V+L+ YNP+ +DESVLWT+S++ G G+R IRMVNNI+LN DAFHGD Y GGV DGT IVLWKW EG+NQ WKI PY
Subjt:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

Q6Z4N6 Ricin B-like lectin R40G21.2e-2768.42Show/hide
Query:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        V+L+ YNP+  DESVLWT+SK+ G+G+R IRMVNNI+LN DAFHGD   GG+HDGT IVLWKW EG+NQ WKI+P+
Subjt:  VQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

Q945P1 Ricin B-like lectin EULS31.2e-2972.15Show/hide
Query:  TMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        T  V LIRY PDK+DESVLWT+SK+FG+GYR IRMVNN  LNVDA+HGD  SGGV DGT IVLW W +G+NQLWKI P+
Subjt:  TMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY

Arabidopsis top hitse value%identityAlignment
AT2G39050.1 hydroxyproline-rich glycoprotein family protein8.8e-3172.15Show/hide
Query:  TMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY
        T  V LIRY PDK+DESVLWT+SK+FG+GYR IRMVNN  LNVDA+HGD  SGGV DGT IVLW W +G+NQLWKI P+
Subjt:  TMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKWKEGENQLWKIVPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTAGGCCAAAAATTACCTCTGGACCTACCAACTGGAAAAAGGACACAACACAATGACATTGAGAAGATGAATTCAATTTCTCACAAGTTCAAAATCAAAATCGA
CTCACGAACGAACATCAAAAACACAATGCAGGTGCAGCTGATACGTTACAATCCGGACAAGGTGGACGAGTCGGTACTGTGGACACAGAGCAAGGAGTTTGGGGAAGGGT
ACAGAGCCATTAGGATGGTGAATAACATTCACTTGAATGTTGATGCTTTTCATGGGGACGATTATTCAGGTGGAGTGCATGATGGCACACACATTGTCCTCTGGAAATGG
AAGGAAGGAGAGAACCAACTATGGAAGATCGTACCCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTAGGCCAAAAATTACCTCTGGACCTACCAACTGGAAAAAGGACACAACACAATGACATTGAGAAGATGAATTCAATTTCTCACAAGTTCAAAATCAAAATCGA
CTCACGAACGAACATCAAAAACACAATGCAGGTGCAGCTGATACGTTACAATCCGGACAAGGTGGACGAGTCGGTACTGTGGACACAGAGCAAGGAGTTTGGGGAAGGGT
ACAGAGCCATTAGGATGGTGAATAACATTCACTTGAATGTTGATGCTTTTCATGGGGACGATTATTCAGGTGGAGTGCATGATGGCACACACATTGTCCTCTGGAAATGG
AAGGAAGGAGAGAACCAACTATGGAAGATCGTACCCTACTAG
Protein sequenceShow/hide protein sequence
MLVGQKLPLDLPTGKRTQHNDIEKMNSISHKFKIKIDSRTNIKNTMQVQLIRYNPDKVDESVLWTQSKEFGEGYRAIRMVNNIHLNVDAFHGDDYSGGVHDGTHIVLWKW
KEGENQLWKIVPY