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Spg012376 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012376
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNuclear ribonuclease Z
Genome locationscaffold1:9284246..9288687
RNA-Seq ExpressionSpg012376
SyntenySpg012376
Gene Ontology termsGO:0034414 - tRNA 3'-trailer cleavage, endonucleolytic (biological process)
GO:0042781 - 3'-tRNA processing endoribonuclease activity (molecular function)
InterPro domainsIPR036866 - Ribonuclease Z/Hydroxyacylglutathione hydrolase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604210.1 tRNase Z TRZ1, partial [Cucurbita argyrosperma subsp. sororia]4.3e-5690.16Show/hide
Query:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
        MEAGTGS  KS +S   E  KGMQIEGYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQKAI QNFL ISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
Subjt:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK

Query:  SIKNDVENLLEVHRRLDQSELR
        SIKNDVENLLEVHRRLDQSELR
Subjt:  SIKNDVENLLEVHRRLDQSELR

KAG7034370.1 tRNase Z TRZ1 [Cucurbita argyrosperma subsp. argyrosperma]4.3e-5690.16Show/hide
Query:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
        MEAGTGS  KS +S   E  KGMQIEGYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQKAI QNFL ISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
Subjt:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK

Query:  SIKNDVENLLEVHRRLDQSELR
        SIKNDVENLLEVHRRLDQSELR
Subjt:  SIKNDVENLLEVHRRLDQSELR

XP_022133332.1 tRNase Z TRZ1 [Momordica charantia]2.5e-5690.16Show/hide
Query:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
        ME GTGS  KS +S  ME KKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLY MEPPTII+PK
Subjt:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK

Query:  SIKNDVENLLEVHRRLDQSELR
        SIK DVENLLEVHRRLD SELR
Subjt:  SIKNDVENLLEVHRRLDQSELR

XP_022950835.1 tRNase Z TRZ1 [Cucurbita moschata]4.3e-5690.16Show/hide
Query:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
        MEAGTGS  KS +S   E  KGMQIEGYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQKAI QNFL ISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
Subjt:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK

Query:  SIKNDVENLLEVHRRLDQSELR
        SIKNDVENLLEVHRRLDQSELR
Subjt:  SIKNDVENLLEVHRRLDQSELR

XP_022979026.1 tRNase Z TRZ1 [Cucurbita maxima]4.3e-5690.16Show/hide
Query:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
        MEAGTGS  KS +S   E  KGMQIEGYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQKAI QNFL ISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
Subjt:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK

Query:  SIKNDVENLLEVHRRLDQSELR
        SIKNDVENLLEVHRRLDQSELR
Subjt:  SIKNDVENLLEVHRRLDQSELR

TrEMBL top hitse value%identityAlignment
A0A0A0L1I3 Lactamase_B domain-containing protein3.7e-5386.18Show/hide
Query:  MEAGTGS-GGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVP
        M AGT S   K+ +S  ME  KG+QIEGYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQKAI Q+FLFISHGHMDHIGGLPLYVATRGLYKM PPTIIVP
Subjt:  MEAGTGS-GGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVP

Query:  KSIKNDVENLLEVHRRLDQSELR
        KSIKNDVENLLEVHRRLDQSELR
Subjt:  KSIKNDVENLLEVHRRLDQSELR

A0A1S3C5G3 nuclear ribonuclease Z2.4e-5284.55Show/hide
Query:  MEAGTGS-GGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVP
        M AGT +   K+ +S  ME  KG+QI GYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAI Q+FLFISHGHMDHIGGLPLYVATRGLYKM PPTI+VP
Subjt:  MEAGTGS-GGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVP

Query:  KSIKNDVENLLEVHRRLDQSELR
        KSIKNDVENLLEVHRRLDQSELR
Subjt:  KSIKNDVENLLEVHRRLDQSELR

A0A6J1BWD5 tRNase Z TRZ11.2e-5690.16Show/hide
Query:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
        ME GTGS  KS +S  ME KKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLY MEPPTII+PK
Subjt:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK

Query:  SIKNDVENLLEVHRRLDQSELR
        SIK DVENLLEVHRRLD SELR
Subjt:  SIKNDVENLLEVHRRLDQSELR

A0A6J1GGV3 tRNase Z TRZ12.1e-5690.16Show/hide
Query:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
        MEAGTGS  KS +S   E  KGMQIEGYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQKAI QNFL ISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
Subjt:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK

Query:  SIKNDVENLLEVHRRLDQSELR
        SIKNDVENLLEVHRRLDQSELR
Subjt:  SIKNDVENLLEVHRRLDQSELR

A0A6J1IPL7 tRNase Z TRZ12.1e-5690.16Show/hide
Query:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
        MEAGTGS  KS +S   E  KGMQIEGYPIKGLSIGGHETC+IFPTLNLAFDIGRCPQKAI QNFL ISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK
Subjt:  MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPK

Query:  SIKNDVENLLEVHRRLDQSELR
        SIKNDVENLLEVHRRLDQSELR
Subjt:  SIKNDVENLLEVHRRLDQSELR

SwissProt top hitse value%identityAlignment
B0R7E2 Ribonuclease Z2.3e-0436.76Show/hide
Query:  FDIGRCPQK-------AIGQNFLFISHGHMDHIGGLPLYVATRGLY-KMEPPTIIVPKSIKNDVENLL
        FD G   Q+         G + +FI+HGH DH+ GLP  V T     + +P TI VP+ ++ D+E+L+
Subjt:  FDIGRCPQK-------AIGQNFLFISHGHMDHIGGLPLYVATRGLY-KMEPPTIIVPKSIKNDVENLL

B1MZQ4 Ribonuclease Z1.8e-0441.1Show/hide
Query:  FDIGRCPQKAIGQNFL--------FISHGHMDHIGGLPLYVATR---GLYKMEPPTIIVPKSIKNDVENLLEV
        FD+G   Q  I +  L        FISH H DHI GLP ++++R   G  K EP TI  PK +K  V+  L V
Subjt:  FDIGRCPQKAIGQNFL--------FISHGHMDHIGGLPLYVATR---GLYKMEPPTIIVPKSIKNDVENLLEV

P60193 Nuclear ribonuclease Z (Fragment)1.1e-4170.19Show/hide
Query:  ETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLD
        + K  ++IEGYP++G+SIGGHETCVIFPTL+LAFDIGRCPQ+A+ Q+FLFISH H+DHIGGLP+YVATRGLY++ PPTI VPK ++  VE L +VHR +D
Subjt:  ETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLD

Query:  QSEL
        QSEL
Subjt:  QSEL

Q8L633 tRNase Z TRZ2, chloroplastic3.6e-3765.69Show/hide
Query:  KKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQS
        +KG+++E Y I+G+S+GGHETCVI P L   FDIGRCP +AI Q FLFI+H H+DHIGGLP+YVA+RGLY +EPP I VP SIK DVE LLE+HR + Q 
Subjt:  KKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQS

Query:  EL
        EL
Subjt:  EL

Q8LGU7 tRNase Z TRZ11.9e-4679.25Show/hide
Query:  METKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRL
        ME KK MQIEGYPI+GLSIGGHETC+IFP+L +AFDIGRCP +AI Q+FLFISH HMDHIGGLP+YVATRGLYKM+PPTIIVP SIK  VE+L EVHR+L
Subjt:  METKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRL

Query:  DQSELR
        D SEL+
Subjt:  DQSELR

Arabidopsis top hitse value%identityAlignment
AT1G74700.1 tRNAse Z11.3e-4779.25Show/hide
Query:  METKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRL
        ME KK MQIEGYPI+GLSIGGHETC+IFP+L +AFDIGRCP +AI Q+FLFISH HMDHIGGLP+YVATRGLYKM+PPTIIVP SIK  VE+L EVHR+L
Subjt:  METKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRL

Query:  DQSELR
        D SEL+
Subjt:  DQSELR

AT2G04530.1 Metallo-hydrolase/oxidoreductase superfamily protein2.5e-3865.69Show/hide
Query:  KKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQS
        +KG+++E Y I+G+S+GGHETCVI P L   FDIGRCP +AI Q FLFI+H H+DHIGGLP+YVA+RGLY +EPP I VP SIK DVE LLE+HR + Q 
Subjt:  KKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLLEVHRRLDQS

Query:  EL
        EL
Subjt:  EL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAGGAACTGGAAGTGGCGGCAAAAGCTTCGAGTCGGGCCAGATGGAAACGAAGAAGGGAATGCAAATTGAAGGATACCCGATTAAGGGTTTGTCCATTGGAGG
CCACGAAACTTGCGTCATTTTCCCAACCCTTAATTTGGCCTTTGATATTGGTCGCTGCCCCCAAAAGGCTATAGGCCAGAACTTCCTCTTCATCTCCCATGGTCATATGG
ATCACATTGGGGGACTTCCGTTGTACGTTGCTACGCGTGGATTGTACAAAATGGAACCGCCAACAATCATTGTACCAAAATCTATAAAGAATGATGTAGAAAATCTCTTA
GAGGTGCACCGAAGATTGGATCAATCCGAGCTGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCAGGAACTGGAAGTGGCGGCAAAAGCTTCGAGTCGGGCCAGATGGAAACGAAGAAGGGAATGCAAATTGAAGGATACCCGATTAAGGGTTTGTCCATTGGAGG
CCACGAAACTTGCGTCATTTTCCCAACCCTTAATTTGGCCTTTGATATTGGTCGCTGCCCCCAAAAGGCTATAGGCCAGAACTTCCTCTTCATCTCCCATGGTCATATGG
ATCACATTGGGGGACTTCCGTTGTACGTTGCTACGCGTGGATTGTACAAAATGGAACCGCCAACAATCATTGTACCAAAATCTATAAAGAATGATGTAGAAAATCTCTTA
GAGGTGCACCGAAGATTGGATCAATCCGAGCTGAGATGA
Protein sequenceShow/hide protein sequence
MEAGTGSGGKSFESGQMETKKGMQIEGYPIKGLSIGGHETCVIFPTLNLAFDIGRCPQKAIGQNFLFISHGHMDHIGGLPLYVATRGLYKMEPPTIIVPKSIKNDVENLL
EVHRRLDQSELR