CuGenDBv2

Gene ID	Spg012397
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box protein SKIP24
Genome location	scaffold1:18410675..18413901
RNA-Seq Expression	Spg012397
Synteny	Spg012397
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR036047 - F-box-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK09707.1 F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa]

1.8e-69

77.66

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK+ ALTY+DLCCVSI+S RLRRLS   SLWSHL SSD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T  LTELS+LR VREATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

XP_004144305.1 F-box protein SKIP24 isoform X1 [Cucumis sativus]

2.0e-68

76.06

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK++ALTY+DLCCVSI+S RLRRLS   SLWSHL  SD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T + TE S+LR VREATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

XP_016901824.1 PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo]

1.8e-69

77.66

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK+ ALTY+DLCCVSI+S RLRRLS   SLWSHL SSD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T  LTELS+LR VREATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

XP_031740308.1 F-box protein SKIP24 isoform X2 [Cucumis sativus]

2.0e-68

76.06

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK++ALTY+DLCCVSI+S RLRRLS   SLWSHL  SD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T + TE S+LR VREATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

XP_038882938.1 F-box protein SKIP24 [Benincasa hispida]

3.4e-68

76.6

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELP ELW  IL++GVKS+ LTY+DLCCVSI+S RLRRLS D  LWSHL SSD+PSSSS+FP    SSK+LYK RLER+RNRKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ EL+  LM ET+KLT  LTELS+LR VREATVALNVWQPEVIR RQ QIVEQCSVSVDSRSR LDMELK+CKQQIAIF KAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0S2 Uncharacterized protein

9.7e-69

76.06

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK++ALTY+DLCCVSI+S RLRRLS   SLWSHL  SD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T + TE S+LR VREATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

A0A1S4E0Q4 F-box protein SKIP24 isoform X1

6.3e-68

75.13

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK+ ALTY+DLCCVSI+S RLRRLS   SLWSHL SSD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLR-----KVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T  LTELS+LR     ++REATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLR-----KVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

A0A1S4E0S8 F-box protein SKIP24 isoform X2

8.8e-70

77.66

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK+ ALTY+DLCCVSI+S RLRRLS   SLWSHL SSD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T  LTELS+LR VREATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

A0A5A7TK06 F-box protein SKIP24 isoform X1

6.3e-68

75.13

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK+ ALTY+DLCCVSI+S RLRRLS   SLWSHL SSD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLR-----KVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T  LTELS+LR     ++REATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLR-----KVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

A0A5D3CCI3 F-box protein SKIP24 isoform X2

8.8e-70

77.66

Show/hide

Query:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA
        MSELPDELW  ILQIGVK+ ALTY+DLCCVSI+S RLRRLS   SLWSHL SSD+PSSSS+FP    SSK+LYK RLER+R RKK AH  AVLRK+SQIA
Subjt:  MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIA

Query:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        EHYR++ +L+ RL++ET K T  LTELS+LR VREATVALNVWQPEVIR RQKQIVEQCSVSVDSR R LDMELKLCKQQIAIFQKAL
Subjt:  EHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

SwissProt top hits

e value

%identity

Alignment

Q9CAZ0 F-box protein SKIP24

3.7e-49

57.51

Show/hide

Query:  SELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFP------SSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRK
        +E+PDELWR IL+IGVKS   +Y+DLCC+SI+SRRL RLS D SLW  L   DFP      SSSS  P     +K +Y TR ERE+ RK  AHR A+LRK
Subjt:  SELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFP------SSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRK

Query:  DSQIAEHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        +S+I+E  R+I EL+ RL DE ++L  +  + S L KVR+A+VALNVWQPEV+RGRQKQ+VEQ +V V+ R RAL+ME+KLCKQQI    +AL
Subjt:  DSQIAEHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G08710.1 F-box family protein

2.6e-50

57.51

Show/hide

Query:  SELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFP------SSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRK
        +E+PDELWR IL+IGVKS   +Y+DLCC+SI+SRRL RLS D SLW  L   DFP      SSSS  P     +K +Y TR ERE+ RK  AHR A+LRK
Subjt:  SELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFP------SSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRK

Query:  DSQIAEHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        +S+I+E  R+I EL+ RL DE ++L  +  + S L KVR+A+VALNVWQPEV+RGRQKQ+VEQ +V V+ R RAL+ME+KLCKQQI    +AL
Subjt:  DSQIAEHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

AT1G08710.2 F-box family protein

2.6e-50

57.51

Show/hide

Query:  SELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFP------SSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRK
        +E+PDELWR IL+IGVKS   +Y+DLCC+SI+SRRL RLS D SLW  L   DFP      SSSS  P     +K +Y TR ERE+ RK  AHR A+LRK
Subjt:  SELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFP------SSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRK

Query:  DSQIAEHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL
        +S+I+E  R+I EL+ RL DE ++L  +  + S L KVR+A+VALNVWQPEV+RGRQKQ+VEQ +V V+ R RAL+ME+KLCKQQI    +AL
Subjt:  DSQIAEHYRKIEELQRRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKAL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTGAATTGCCAGACGAGCTATGGAGGCTAATTCTCCAAATTGGTGTAAAGAGCCATGCTTTGACTTACAGGGATCTCTGTTGCGTCTCCATCACTTCTCGTCGACT
TCGTCGGCTCTCCGGCGACTACTCTTTATGGTCTCACCTTTTCTCCTCCGACTTCCCTTCATCGTCTTCTACTTTTCCATTATGCCCCCGCTCCTCCAAGGCCCTTTACA
AAACCAGGTTAGAGAGAGAGAGAAATAGAAAGAAAATGGCGCACAGGGTAGCAGTGCTTAGAAAGGATAGCCAAATAGCTGAGCATTATAGAAAGATTGAGGAATTACAG
CGTCGGTTGATGGATGAGACCGATAAATTAACAATGGCCTTGACGGAATTGTCCAGTTTACGCAAGGTCAGGGAAGCAACAGTAGCTTTGAATGTCTGGCAGCCTGAGGT
CATTAGGGGAAGGCAAAAGCAAATTGTCGAACAATGCAGTGTATCTGTTGATTCTCGGTCTCGGGCTCTAGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTT
TCCAGAAAGCATTGCCTGTGACATTACCAGTTGTACTGTCTTATTTAGAAGCTTTTCCTCCTTTTGCTTGCACTTCTATCTCAGCCAAATTAGAATGTGCTGTTGAAGAT
AGTACACAGTCAGTCTACTTCTCATTTGAATATGTATATATGGCCTATGGCTCTCTTTTCTGTTCAAGTAAAGAGGTGTGA

mRNA sequence

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Protein sequence

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MSELPDELWRLILQIGVKSHALTYRDLCCVSITSRRLRRLSGDYSLWSHLFSSDFPSSSSTFPLCPRSSKALYKTRLERERNRKKMAHRVAVLRKDSQIAEHYRKIEELQ
RRLMDETDKLTMALTELSSLRKVREATVALNVWQPEVIRGRQKQIVEQCSVSVDSRSRALDMELKLCKQQIAIFQKALPVTLPVVLSYLEAFPPFACTSISAKLECAVED
STQSVYFSFEYVYMAYGSLFCSSKEV

Spg012397 (gene) of Sponge gourd (cylindrica) v1 genome