CuGenDBv2

Gene ID	Spg012410
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L11
Genome location	scaffold1:17417186..17420718
RNA-Seq Expression	Spg012410
Synteny	Spg012410
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002132 - Ribosomal protein L5 IPR022803 - Ribosomal protein L5 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAG1836840.1 unnamed protein product [Musa acuminata subsp. malaccensis]

2.0e-09

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++T LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

OIW06161.1 hypothetical protein TanjilG_01788 [Lupinus angustifolius]

2.0e-09

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++T LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

XP_010451220.1 PREDICTED: 60S ribosomal protein L11-1-like [Camelina sativa]

3.4e-09

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEYKLL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

XP_010512842.1 PREDICTED: 60S ribosomal protein L11-1-like [Camelina sativa]

3.4e-09

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEYKLL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

XP_019453483.1 PREDICTED: 60S ribosomal protein L11-like [Lupinus angustifolius]

2.0e-09

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++T LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

TrEMBL top hits

e value

%identity

Alignment

A0A1J7HUT5 Uncharacterized protein

9.6e-10

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++T LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

A0A3P5Z6P4 Uncharacterized protein

3.7e-09

48.86

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Query:  ISLHILFSLDTHFSQELEIFVHLSRPTLEAF----SQTFISVQALSKCRSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        +S HILF           I  ++SR T+ +F    ++       +   ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  ISLHILFSLDTHFSQELEIFVHLSRPTLEAF----SQTFISVQALSKCRSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

K3YAB0 Uncharacterized protein

4.8e-09

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

M0U4D6 Ribosomal_L5_C domain-containing protein

9.6e-10

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++T LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

Q6DXR9 Putative ribosomal protein

4.8e-09

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

SwissProt top hits

e value

%identity

Alignment

A2YDY2 60S ribosomal protein L11

3.8e-11

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFS+TGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

P42794 60S ribosomal protein L11-2

1.3e-11

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

P42795 60S ribosomal protein L11-1

1.3e-11

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

P46287 60S ribosomal protein L11

1.3e-11

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

Q0DK10 60S ribosomal protein L11

3.8e-11

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFS+TGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

Arabidopsis top hits

e value

%identity

Alignment

AT2G42740.1 ribosomal protein large subunit 16A

9.2e-13

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

AT3G58700.1 Ribosomal L5P family protein

9.2e-13

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

AT4G18730.1 ribosomal protein L16B

9.2e-13

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

AT5G45775.1 Ribosomal L5P family protein

9.2e-13

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

AT5G45775.2 Ribosomal L5P family protein

9.2e-13

82.5

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Query:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI
        ++  LLESGLKVKEY+LL RNFSDTGCFGF IQEHIDLGI
Subjt:  RSTPLLESGLKVKEYKLLDRNFSDTGCFGFDIQEHIDLGI

Sequences

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CDS sequence

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ATGAAGCTCGTGAACTGGCACCCACGGTTTGCTGTGACACCGCTGAACCTCCAAAGGAAAACCCACGAACGAGACACTGCACGGACTGACGAGAGGTTGCTGGAGGACGC
GCCGCCGCAAGAAGGCTGCTGCACTAGTTCGCGGACGGGGTTGCTCGCCGGAGTAGCTGAACGCCGCCGTCGTCGACCAGGAGGTCTTCGTCTCTCTCGTTCTGGACTGA
ACCCTCTCTTCTGTGTGTCTCTTCCGACTGTGTTGCGAGCAGCTTCCTCCCTCTCACTGAGTGCCCAGTCGCCAATAGTCGCCCAGTCCTCCGATTCTTCCGACCATCAC
CGGCGAGCGAAGCAGCCACGCGATTTCTCGTGTTGTGCAGAGGCTGTGGAGACTGTGGGCTTGGGCTGCCACATCTCCGGCACTGCTGTAGGGAAGTTGACGCCGCCACC
GCCCATAAGTCTGCATATTCTCTTTTCGCTTGACACCCACTTTTCTCAAGAATTGGAGATTTTCGTCCATCTTTCTAGACCAACGCTTGAAGCTTTCTCTCAGACTTTCA
TCTCAGTTCAGGCTCTATCAAAATGTCGTTCCACTCCTCTTTTGGAAAGTGGGTTGAAGGTTAAGGAGTACAAGTTGCTTGACAGGAACTTCAGTGACACTGGATGCTTT
GGCTTTGATATTCAGGAGCACATTGATCTTGGAATCTAA

mRNA sequence

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Protein sequence

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MKLVNWHPRFAVTPLNLQRKTHERDTARTDERLLEDAPPQEGCCTSSRTGLLAGVAERRRRRPGGLRLSRSGLNPLFCVSLPTVLRAASSLSLSAQSPIVAQSSDSSDHH
RRAKQPRDFSCCAEAVETVGLGCHISGTAVGKLTPPPPISLHILFSLDTHFSQELEIFVHLSRPTLEAFSQTFISVQALSKCRSTPLLESGLKVKEYKLLDRNFSDTGCF
GFDIQEHIDLGI

Spg012410 (gene) of Sponge gourd (cylindrica) v1 genome