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Spg012429 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012429
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S28
Genome locationscaffold1:19409873..19410991
RNA-Seq ExpressionSpg012429
SyntenySpg012429
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold
IPR028626 - Ribosomal protein S28e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4913629.1 hypothetical protein JHK86_054062 [Glycine max]6.0e-2690.28Show/hide
Query:  LDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        LD   L+MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  LDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG7027430.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-2691.89Show/hide
Query:  LELDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        L L  V + MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  LELDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KGN63808.2 hypothetical protein Csa_014218 [Cucumis sativus]2.1e-2698.51Show/hide
Query:  LKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        L+MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  LKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

TXG54614.1 hypothetical protein EZV62_019870 [Acer yangbiense]7.8e-2679.07Show/hide
Query:  NFHDADDFQIVL-ELDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        NF +   F  ++ +LD +  +M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  NFHDADDFQIVL-ELDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]6.0e-2698.48Show/hide
Query:  KMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        +MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  KMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

TrEMBL top hitse value%identityAlignment
A0A0A0LPR2 Uncharacterized protein5.0e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A1S3CD61 40S ribosomal protein S28-15.0e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A5C7HCC4 Uncharacterized protein3.8e-2679.07Show/hide
Query:  NFHDADDFQIVL-ELDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        NF +   F  ++ +LD +  +M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Subjt:  NFHDADDFQIVL-ELDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1C0B5 40S ribosomal protein S28-1-like2.9e-2698.48Show/hide
Query:  KMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        +MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  KMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1HTG7 40S ribosomal protein S28-15.0e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-27.6e-2489.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

P46302 40S ribosomal protein S281.2e-2490.77Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q6PBK3 40S ribosomal protein S281.5e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q90YP3 40S ribosomal protein S281.5e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q9SR73 40S ribosomal protein S28-12.0e-2492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.4e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.4e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G64140.1 ribosomal protein S285.4e-2589.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTGTTTCTGCGATTGAATTTTCACGATGCCGATGATTTTCAAATAGTACTTGAACTGGATACTGTCGTATTGAAAATGGAGTCTCAAATCAAACATGCTGTGGT
GGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCAGTCA
GGGAAGGCGATATTCTAACCCTACTCGAGTCTGAGAGGGAAGCTAGAAGGTTGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTGTTTCTGCGATTGAATTTTCACGATGCCGATGATTTTCAAATAGTACTTGAACTGGATACTGTCGTATTGAAAATGGAGTCTCAAATCAAACATGCTGTGGT
GGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCAGTCA
GGGAAGGCGATATTCTAACCCTACTCGAGTCTGAGAGGGAAGCTAGAAGGTTGCGTTGA
Protein sequenceShow/hide protein sequence
MILFLRLNFHDADDFQIVLELDTVVLKMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR