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Spg012512 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012512
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold1:6658793..6660623
RNA-Seq ExpressionSpg012512
SyntenySpg012512
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFP55557.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]3.8e-0735.05Show/hide
Query:  LTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCNDR
        L L   +R +N+ +ESDCL+AI+L++ +       G +VE+I+N     +  S  ++ R  N  A AIAK+V       VW+   P+WL  L+C+D+
Subjt:  LTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCNDR

KAG6585310.1 hypothetical protein SDJN03_18043, partial [Cucurbita argyrosperma subsp. sororia]1.3e-0751.19Show/hide
Query:  LEGHAFSSLIQIHQ-IHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE
        LE    S   +++Q I      QAEA +SAQ LKK IE+NE+L +ENS L +Q K+MK IA+RGK  ++ AKEAE R R+L DE
Subjt:  LEGHAFSSLIQIHQ-IHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE

KAG7020228.1 hypothetical protein SDJN02_16911, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-0751.19Show/hide
Query:  LEGHAFSSLIQIHQ-IHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE
        LE    S   +++Q I      QAEA +SAQ LKK IE+NE+L +ENS L +Q K+MK IA+RGK  ++ AKEAE R R+L DE
Subjt:  LEGHAFSSLIQIHQ-IHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE

XP_022131622.1 uncharacterized protein LOC111004753 [Momordica charantia]4.0e-0963.38Show/hide
Query:  HQIHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE
        HQI      +AEAKLSAQ+LKK IEKN  L EENS L  QCKK+KA AN+ K  V+RA E  ARVRELE E
Subjt:  HQIHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE

XP_038885825.1 uncharacterized protein LOC120076121 [Benincasa hispida]1.1e-1169.7Show/hide
Query:  EAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDERPSSKL
        EAKL+AQ LKK IEKN+QL EENS LVEQCKKMKA  NRGK  ++RAKE + RV ELEDE    KL
Subjt:  EAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDERPSSKL

TrEMBL top hitse value%identityAlignment
A0A2P6P4A4 Putative ribonuclease H-like domain-containing protein4.5e-0634.88Show/hide
Query:  NMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCND
        ++ +E+DCL+A+ L+   GE   E+G +VEE+R+  L        ++ R  N VA +IAK+V  E     W    P WL +++ ND
Subjt:  NMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCND

A0A2P6SH84 Putative ribonuclease H-like domain-containing protein1.7e-0533.72Show/hide
Query:  NMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCND
        ++ +E+DCL+A+ L+   GE   E+G +VEE+R+  L        ++ R  N VA +IA +V  E     W    P WL +++ ND
Subjt:  NMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCND

A0A6J1BRI9 uncharacterized protein LOC1110047532.0e-0963.38Show/hide
Query:  HQIHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE
        HQI      +AEAKLSAQ+LKK IEKN  L EENS L  QCKK+KA AN+ K  V+RA E  ARVRELE E
Subjt:  HQIHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE

A0A6J1GIQ2 uncharacterized protein LOC1114545502.9e-0557.89Show/hide
Query:  LSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE
        +SAQ LKK IE+NE+L +ENS L +Q KKMK IA+RGK  ++  KEAE R R+L +E
Subjt:  LSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAKEAEARVRELEDE

J7G0Q7 Non-ltr retroelement reverse transcriptase1.8e-0735.05Show/hide
Query:  LTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCNDR
        L L   +R +N+ +ESDCL+AI+L++ +       G +VE+I+N     +  S  ++ R  N  A AIAK+V       VW+   P+WL  L+C+D+
Subjt:  LTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHFFPEWLNELVCNDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G14680.1 unknown protein1.4e-0738.61Show/hide
Query:  LVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKK-----------MKAIANRGKSVVNRAKEAEARVRELEDERPSSKLASFTGRELEDERRCDMESW
        LV++EA ++AQSLKK +E+N++L  E   LV QCKK            +++   G     RA+EAE+RVRELE+E    K++      +E E  C ++S 
Subjt:  LVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKK-----------MKAIANRGKSVVNRAKEAEARVRELEDERPSSKLASFTGRELEDERRCDMESW

Query:  L
        L
Subjt:  L

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.4e-0430.36Show/hide
Query:  TGRELEDERRCDMESWLTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHF
        T   LE E +  + + L   W +    + ME DC    NL+S      N +  ++++IR  A  FS + FS++ R  N VA  +AK   N          
Subjt:  TGRELEDERRCDMESWLTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVKNERKNDVWIHF

Query:  FPEWLNELVCND
         P WL++  CND
Subjt:  FPEWLNELVCND

AT4G09060.1 unknown protein1.8e-0741.11Show/hide
Query:  HYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMK-----------AIANRGKSVVNRAKEAEARVRELEDE--RPSSKLASF
        H +  V++EA ++AQ+LKK +E+N++L  E   L+ QCKK++           A+   G     RA+EAEARVRELEDE  R S ++  F
Subjt:  HYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMK-----------AIANRGKSVVNRAKEAEARVRELEDE--RPSSKLASF

AT4G09060.2 unknown protein1.8e-0732.05Show/hide
Query:  HYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMK-----------AIANRGKSVVNRAKEAEARVRELEDE--RPSSKLASF-----TGREL
        H +  V++EA ++AQ+LKK +E+N++L  E   L+ QCKK++           A+   G     RA+EAEARVRELEDE  R S ++  F      G +L
Subjt:  HYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMK-----------AIANRGKSVVNRAKEAEARVRELEDE--RPSSKLASF-----TGREL

Query:  EDERRCDMESWLTL------HWN--QRCKNMKMESDCLQAI--NLMSREGEVKNEM
        E   R ++   + L      H+N  + C    +E D L ++  +L+S++  +   +
Subjt:  EDERRCDMESWLTL------HWN--QRCKNMKMESDCLQAI--NLMSREGEVKNEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGCCTGCGAACAGCAAAGTCGTTCTATTGCTATCCTTTTCTCCATAGCCATGTCTTTATGTGTTACATTCATATATCAAATTGTTGATCGCAATGTATGTGTTGT
GGGAAGCGGACTTCGGAGGAGAGCGAGTCGAAGGGTTTGGGCCGAGACGGCCTCGGCCCACTCATGTGGGCCGAGTTCCCTCACCCCCGTTTGGTCCCTGGTGCCTCTGG
CCACCCCAGTCCCACCTGATTTAGTCCGAAGCGCCTTCGAACGCCTAAAAACCCTAGATGAGGAACAAGTATTTAAACCTTTTTTCATCATTGAAGAAAGGGATCTCCGA
ACTCTATTATCTGATTCTCCTCTTGCTCTTACTCTTTTGCTTCCCATCGTTCTGCTTGCTGACTTAAGCATCAGAGGCGGTGTGGCAACCACCACACCGGTGTGCAGGTT
TTACTGTCTTGAAGGCCACGCCTTCTCCTCTCTCATACAAATTCACCAGATTCATTACGTTGTTCTGGTTCAGGCGGAAGCAAAGTTGAGTGCGCAGAGCCTGAAGAAAG
TCATCGAGAAAAACGAACAATTGAGGGAAGAGAATTCGGGTTTGGTGGAGCAATGCAAGAAAATGAAAGCCATCGCCAACAGAGGGAAATCCGTCGTCAATCGCGCCAAG
GAAGCAGAAGCTCGTGTGCGTGAGTTGGAAGACGAGAGGCCATCCAGTAAATTGGCTTCCTTCACCGGTAGGGAGCTGGAAGATGAACGTCGATGCGACATGGAAAGCTG
GCTTACCTTGCATTGGAATCAGAGGTGTAAGAACATGAAGATGGAATCTGATTGCCTCCAAGCGATTAATCTAATGTCAAGGGAAGGGGAAGTGAAGAACGAAATGGGAA
CAGTGGTGGAAGAAATTCGAAATCGTGCCTTGTTCTTCTCTGAGATTTCCTTTTCATATATTTCTAGAAATTGTAATATTGTAGCTGATGCCATTGCAAAATGGGTTAAA
AATGAAAGGAAGAATGATGTATGGATCCACTTCTTTCCAGAGTGGCTGAATGAGTTGGTCTGTAATGATCGTTATTCTGTTGCCCTCGTGGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGCCTGCGAACAGCAAAGTCGTTCTATTGCTATCCTTTTCTCCATAGCCATGTCTTTATGTGTTACATTCATATATCAAATTGTTGATCGCAATGTATGTGTTGT
GGGAAGCGGACTTCGGAGGAGAGCGAGTCGAAGGGTTTGGGCCGAGACGGCCTCGGCCCACTCATGTGGGCCGAGTTCCCTCACCCCCGTTTGGTCCCTGGTGCCTCTGG
CCACCCCAGTCCCACCTGATTTAGTCCGAAGCGCCTTCGAACGCCTAAAAACCCTAGATGAGGAACAAGTATTTAAACCTTTTTTCATCATTGAAGAAAGGGATCTCCGA
ACTCTATTATCTGATTCTCCTCTTGCTCTTACTCTTTTGCTTCCCATCGTTCTGCTTGCTGACTTAAGCATCAGAGGCGGTGTGGCAACCACCACACCGGTGTGCAGGTT
TTACTGTCTTGAAGGCCACGCCTTCTCCTCTCTCATACAAATTCACCAGATTCATTACGTTGTTCTGGTTCAGGCGGAAGCAAAGTTGAGTGCGCAGAGCCTGAAGAAAG
TCATCGAGAAAAACGAACAATTGAGGGAAGAGAATTCGGGTTTGGTGGAGCAATGCAAGAAAATGAAAGCCATCGCCAACAGAGGGAAATCCGTCGTCAATCGCGCCAAG
GAAGCAGAAGCTCGTGTGCGTGAGTTGGAAGACGAGAGGCCATCCAGTAAATTGGCTTCCTTCACCGGTAGGGAGCTGGAAGATGAACGTCGATGCGACATGGAAAGCTG
GCTTACCTTGCATTGGAATCAGAGGTGTAAGAACATGAAGATGGAATCTGATTGCCTCCAAGCGATTAATCTAATGTCAAGGGAAGGGGAAGTGAAGAACGAAATGGGAA
CAGTGGTGGAAGAAATTCGAAATCGTGCCTTGTTCTTCTCTGAGATTTCCTTTTCATATATTTCTAGAAATTGTAATATTGTAGCTGATGCCATTGCAAAATGGGTTAAA
AATGAAAGGAAGAATGATGTATGGATCCACTTCTTTCCAGAGTGGCTGAATGAGTTGGTCTGTAATGATCGTTATTCTGTTGCCCTCGTGGCATAA
Protein sequenceShow/hide protein sequence
MLACEQQSRSIAILFSIAMSLCVTFIYQIVDRNVCVVGSGLRRRASRRVWAETASAHSCGPSSLTPVWSLVPLATPVPPDLVRSAFERLKTLDEEQVFKPFFIIEERDLR
TLLSDSPLALTLLLPIVLLADLSIRGGVATTTPVCRFYCLEGHAFSSLIQIHQIHYVVLVQAEAKLSAQSLKKVIEKNEQLREENSGLVEQCKKMKAIANRGKSVVNRAK
EAEARVRELEDERPSSKLASFTGRELEDERRCDMESWLTLHWNQRCKNMKMESDCLQAINLMSREGEVKNEMGTVVEEIRNRALFFSEISFSYISRNCNIVADAIAKWVK
NERKNDVWIHFFPEWLNELVCNDRYSVALVA