CuGenDBv2

Gene ID	Spg012600
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cystathionine beta-lyase, chloroplastic
Genome location	scaffold1:20444795..20447003
RNA-Seq Expression	Spg012600
Synteny	Spg012600
Gene Ontology terms	GO:0019343 - cysteine biosynthetic process via cystathionine (biological process) GO:0019346 - transsulfuration (biological process) GO:0071266 - 'de novo' L-methionine biosynthetic process (biological process) GO:0005737 - cytoplasm (cellular component) GO:0004121 - cystathionine beta-lyase activity (molecular function) GO:0004123 - cystathionine gamma-lyase activity (molecular function) GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33990.1 cystathionine beta-lyase [Cucumis melo subsp. melo]

5.5e-24

67.74

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Query:  SNTLSAVKVFTSKR----FGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ
        S+     K  TSK     FGF K PFSRC+QL + + CSMD+E+DV +STLIDD ELEE +PSISTMIMNFE+KFDPY AVSTPLYQTATFKQ
Subjt:  SNTLSAVKVFTSKR----FGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ

XP_004144238.1 cystathionine beta-lyase, chloroplastic isoform X1 [Cucumis sativus]

5.9e-26

68.04

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Query:  PDGLAAARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ
        P   AA RS  +++     S  FGF K PFSRC+QL++SK CSMD+E+DV +STLIDD ELEE +PSISTMIMNFE+KFDPY AVSTPLYQTATFKQ
Subjt:  PDGLAAARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ

XP_022925160.1 cystathionine beta-lyase, chloroplastic isoform X1 [Cucurbita moschata]

1.4e-27

72.63

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Query:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        AA  N  SA  +    RFGF KLP+SRCNQLL+SK CS+ RE+DV +STLIDDVELEE +PSISTMIMNFE+KFDPYDAVS PLYQTATFKQ S+
Subjt:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

XP_022966307.1 cystathionine beta-lyase, chloroplastic isoform X1 [Cucurbita maxima]

3.5e-26

70.53

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Query:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        AA  N  SA       RFGF K P+SRCNQLL+SK CS+ RE+DV +STLIDDVELEE +P+ISTMIMNFE+KFDPYDAVS PLYQTATFKQ S+
Subjt:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

XP_023518642.1 cystathionine beta-lyase, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]

1.4e-27

72.63

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Query:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        AA  N  SA  +    RFGF KLP+SRCNQLL+SK CS+ RE+DV +STLIDDVELEE +PSISTMIMNFE+KFDPYDAVS PLYQTATFKQ S+
Subjt:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCY8 Uncharacterized protein

2.9e-26

68.04

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Query:  PDGLAAARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ
        P   AA RS  +++     S  FGF K PFSRC+QL++SK CSMD+E+DV +STLIDD ELEE +PSISTMIMNFE+KFDPY AVSTPLYQTATFKQ
Subjt:  PDGLAAARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ

A0A1S3CMJ4 cystathionine beta-lyase, chloroplastic

2.7e-24

67.74

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Query:  SNTLSAVKVFTSKR----FGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ
        S+     K  TSK     FGF K PFSRC+QL + + CSMD+E+DV +STLIDD ELEE +PSISTMIMNFE+KFDPY AVSTPLYQTATFKQ
Subjt:  SNTLSAVKVFTSKR----FGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ

A0A5A7TA30 Cystathionine beta-lyase

2.7e-24

67.74

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Query:  SNTLSAVKVFTSKR----FGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ
        S+     K  TSK     FGF K PFSRC+QL + + CSMD+E+DV +STLIDD ELEE +PSISTMIMNFE+KFDPY AVSTPLYQTATFKQ
Subjt:  SNTLSAVKVFTSKR----FGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQ

A0A6J1EBF6 cystathionine beta-lyase, chloroplastic isoform X1

6.8e-28

72.63

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Query:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        AA  N  SA  +    RFGF KLP+SRCNQLL+SK CS+ RE+DV +STLIDDVELEE +PSISTMIMNFE+KFDPYDAVS PLYQTATFKQ S+
Subjt:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

A0A6J1HTE3 cystathionine beta-lyase, chloroplastic isoform X1

1.7e-26

70.53

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Query:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        AA  N  SA       RFGF K P+SRCNQLL+SK CS+ RE+DV +STLIDDVELEE +P+ISTMIMNFE+KFDPYDAVS PLYQTATFKQ S+
Subjt:  AARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

SwissProt top hits

e value

%identity

Alignment

P53780 Cystathionine beta-lyase, chloroplastic

1.3e-07

41.79

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Query:  NCSMDRELDVRSSTLIDD-------VELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        NC M++ +D ++ + +++       + ++E + S+ST+++N + KFDP+DA+STPLYQTATFKQ S+
Subjt:  NCSMDRELDVRSSTLIDD-------VELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

Arabidopsis top hits

e value

%identity

Alignment

AT3G57050.1 cystathionine beta-lyase

9.2e-09

41.79

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Query:  NCSMDRELDVRSSTLIDD-------VELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        NC M++ +D ++ + +++       + ++E + S+ST+++N + KFDP+DA+STPLYQTATFKQ S+
Subjt:  NCSMDRELDVRSSTLIDD-------VELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

AT3G57050.2 cystathionine beta-lyase

2.0e-08

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Query:  NCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        NC M++ +D  +          + + S+ST+++N + KFDP+DA+STPLYQTATFKQ S+
Subjt:  NCSMDRELDVRSSTLIDDVELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

AT3G57050.3 cystathionine beta-lyase

9.2e-09

41.79

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Query:  NCSMDRELDVRSSTLIDD-------VELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS
        NC M++ +D ++ + +++       + ++E + S+ST+++N + KFDP+DA+STPLYQTATFKQ S+
Subjt:  NCSMDRELDVRSSTLIDD-------VELEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSS

Sequences

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CDS sequence

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ATGCACAGCAATGCCTCGGCTTTCGCCGATCCTGCCCGACGCCGTCCAAGCGTGTGCCGCCGCACGCCACCGCCACTCGCCCGCTCCTGCCCCACGCTGTCTCAGCGCCT
GCCGCTGCACGCTGCCCTTCAGCTGCTGCAATCTCAGCCTCCCGACGGACTCGCCGCCGCCCGCTCTAATACTCTCTCCGCAGTCAAAGTATTCACTTCGAAGAGGTTTG
GATTTCTTAAGCTACCATTTTCAAGGTGTAATCAATTGTTGATTTCGAAGAACTGCTCTATGGACAGAGAGCTGGATGTTCGCTCCTCGACCTTGATTGATGATGTTGAG
TTGGAGGAACCAAAGCCAAGCATTTCAACTATGATAATGAATTTTGAAACTAAGTTTGATCCTTATGATGCTGTTAGCACCCCGCTTTACCAAACTGCGACCTTCAAGCA
AGTAAGTAGTAGGAGTGTTTTATTATAG

mRNA sequence

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Protein sequence

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MHSNASAFADPARRRPSVCRRTPPPLARSCPTLSQRLPLHAALQLLQSQPPDGLAAARSNTLSAVKVFTSKRFGFLKLPFSRCNQLLISKNCSMDRELDVRSSTLIDDVE
LEEPKPSISTMIMNFETKFDPYDAVSTPLYQTATFKQVSSRSVLL

Spg012600 (gene) of Sponge gourd (cylindrica) v1 genome