; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg012602 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012602
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionelongator complex protein 4
Genome locationscaffold1:7223954..7228252
RNA-Seq ExpressionSpg012602
SyntenySpg012602
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0033588 - Elongator holoenzyme complex (cellular component)
InterPro domainsIPR008728 - Elongator complex protein 4
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132387.1 elongator complex protein 4 [Momordica charantia]2.7e-7196.48Show/hide
Query:  MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG
        MAATKPRTSSFSRNFSSAHSSQ PGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHN PLLYASPSRDPRGFLG
Subjt:  MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG

Query:  TLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN
        TLPSPGTSKDDKSRD+ AEQEKGLRIAWQYKKYFGDSQES+N
Subjt:  TLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN

XP_022963337.1 elongator complex protein 4 isoform X1 [Cucurbita moschata]3.5e-7195.8Show/hide
Query:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
        A TKPRTSSFSRN SSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
Subjt:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT

Query:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM
        LPSPGTSKD KSRDSSAEQEKGLRIAWQYKKYFG+SQES+NA+
Subjt:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM

XP_022963340.1 elongator complex protein 4 isoform X2 [Cucurbita moschata]3.5e-7195.8Show/hide
Query:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
        A TKPRTSSFSRN SSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
Subjt:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT

Query:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM
        LPSPGTSKD KSRDSSAEQEKGLRIAWQYKKYFG+SQES+NA+
Subjt:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM

XP_023518134.1 elongator complex protein 4, partial [Cucurbita pepo subsp. pepo]2.7e-7195.8Show/hide
Query:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
        A TKPRTSSFSRN SSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
Subjt:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT

Query:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM
        LPSPGTSKD+KSRDSSAEQEKGLRIAWQYKKYFG+SQES+NA+
Subjt:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM

XP_038881127.1 elongator complex protein 4 [Benincasa hispida]2.0e-7195.14Show/hide
Query:  MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG
        MA TKPRTSSFSRNFSSAHSS+TPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG
Subjt:  MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG

Query:  TLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM
        TLPSPGTSKDDKSRD+S EQEKGLRIAWQYKKYFGD QES NA+
Subjt:  TLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM

TrEMBL top hitse value%identityAlignment
A0A1S3B1C3 elongator complex protein 4 isoform X11.1e-7093.75Show/hide
Query:  MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG
        MAATKPRT SFSRNFSSAHSS+TPG KHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG
Subjt:  MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG

Query:  TLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM
        TLPSPG SKDDKSRD+S+EQEKGLRIAWQYKKYFGD QES NA+
Subjt:  TLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM

A0A6J1BTP5 elongator complex protein 41.3e-7196.48Show/hide
Query:  MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG
        MAATKPRTSSFSRNFSSAHSSQ PGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHN PLLYASPSRDPRGFLG
Subjt:  MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLG

Query:  TLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN
        TLPSPGTSKDDKSRD+ AEQEKGLRIAWQYKKYFGDSQES+N
Subjt:  TLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN

A0A6J1HHQ8 elongator complex protein 4 isoform X21.7e-7195.8Show/hide
Query:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
        A TKPRTSSFSRN SSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
Subjt:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT

Query:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM
        LPSPGTSKD KSRDSSAEQEKGLRIAWQYKKYFG+SQES+NA+
Subjt:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM

A0A6J1HJT5 elongator complex protein 4 isoform X11.7e-7195.8Show/hide
Query:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
        A TKPRTSSFSRN SSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
Subjt:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT

Query:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM
        LPSPGTSKD KSRDSSAEQEKGLRIAWQYKKYFG+SQES+NA+
Subjt:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM

A0A6J1KLY1 elongator complex protein 42.9e-7195.1Show/hide
Query:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
        A TKPRTSSFSRN SSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT
Subjt:  AATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGT

Query:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM
        LPSPGTSKD+KSRDSSAEQEKGLRIAWQYKKYFG+SQE++NA+
Subjt:  LPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAM

SwissProt top hitse value%identityAlignment
Q2TBH6 Elongator complex protein 41.8e-0932.71Show/hide
Query:  NGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSP------GTSKDDKSRDSSAEQEKGL
        NG   +S+G+P LD++L GG  +G+++L+ ED    +  LL + F+++G+V    LL AS   DP   L  LP+P          D+       E +  +
Subjt:  NGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSP------GTSKDDKSRDSSAEQEKGL

Query:  RIAWQYK
        +IAW+Y+
Subjt:  RIAWQYK

Q5XG58 Elongator complex protein 43.2e-1134.55Show/hide
Query:  NGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSK------DDKSRDSSA---EQE
        NG   +S+G+P LD IL GG  +G+L+L+ ED    +  LLL+ F+++G+V    +  AS + DP   L  LPSP T +        +++D+S    + +
Subjt:  NGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSK------DDKSRDSSA---EQE

Query:  KGLRIAWQYK
        + ++IAW+Y+
Subjt:  KGLRIAWQYK

Q96EB1 Elongator complex protein 44.6e-1033.64Show/hide
Query:  NGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDDKSR---------DSSAEQE
        NG   +S+G+P LD++L GG  +G+++L+ ED    +  LL + F+++G+V+   LL AS   DP   L  LP+P    DDK +           + E  
Subjt:  NGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDDKSR---------DSSAEQE

Query:  KGLRIAWQYK
          ++IAW+Y+
Subjt:  KGLRIAWQYK

Q9C778 Elongator complex protein 49.0e-4666.43Show/hide
Query:  MAATKPR-TSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFL
        MAA   R +SSFSRN S   S Q PGLK GPNGT FISSGI DLD+IL GG+PLGSLV+VMED EAPHHM LLR +MSQGLV+NQPLLYASPS+DP+GFL
Subjt:  MAATKPR-TSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFL

Query:  GTLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN
        GTLP P +SK+DK      +Q + LRIAWQY+KY  + + +I+
Subjt:  GTLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN

Q9ER73 Elongator complex protein 42.7e-1034.58Show/hide
Query:  NGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSP---GTSK---DDKSRDSSAEQEKGL
        NG   +S+G+P LD++L GG  +G+L+L+ ED    +  LL + FM++G+++   LL AS   +P   L  LP+P     SK   +D     + E    +
Subjt:  NGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSP---GTSK---DDKSRDSSAEQEKGL

Query:  RIAWQYK
        +IAW+Y+
Subjt:  RIAWQYK

Arabidopsis top hitse value%identityAlignment
AT3G11220.1 Paxneb protein-related6.4e-4766.43Show/hide
Query:  MAATKPR-TSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFL
        MAA   R +SSFSRN S   S Q PGLK GPNGT FISSGI DLD+IL GG+PLGSLV+VMED EAPHHM LLR +MSQGLV+NQPLLYASPS+DP+GFL
Subjt:  MAATKPR-TSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFL

Query:  GTLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN
        GTLP P +SK+DK      +Q + LRIAWQY+KY  + + +I+
Subjt:  GTLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN

AT3G11220.2 Paxneb protein-related6.4e-4766.43Show/hide
Query:  MAATKPR-TSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFL
        MAA   R +SSFSRN S   S Q PGLK GPNGT FISSGI DLD+IL GG+PLGSLV+VMED EAPHHM LLR +MSQGLV+NQPLLYASPS+DP+GFL
Subjt:  MAATKPR-TSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFL

Query:  GTLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN
        GTLP P +SK+DK      +Q + LRIAWQY+KY  + + +I+
Subjt:  GTLPSPGTSKDDKSRDSSAEQEKGLRIAWQYKKYFGDSQESIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCGACAAAGCCTAGGACAAGCAGCTTCTCACGCAACTTTTCTTCTGCACATTCATCTCAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATCTC
ATCCGGAATACCAGACCTTGACAAGATTCTTTGTGGTGGGTTTCCTTTGGGAAGCTTGGTCTTGGTGATGGAAGATGCAGAAGCTCCTCATCACATGCTTTTATTGCGGA
ATTTTATGTCTCAGGGACTTGTTCACAACCAGCCCCTACTTTATGCTAGTCCATCCAGAGACCCAAGAGGATTCCTGGGTACTTTGCCAAGTCCAGGGACATCAAAAGAT
GATAAATCTCGTGACAGTTCTGCCGAACAGGAGAAGGGCTTAAGGATTGCTTGGCAATATAAGAAGTATTTCGGCGACAGCCAAGAGAGCATCAATGCCATGGGTAAGCT
TACTGAGACCTCAGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCGACAAAGCCTAGGACAAGCAGCTTCTCACGCAACTTTTCTTCTGCACATTCATCTCAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATCTC
ATCCGGAATACCAGACCTTGACAAGATTCTTTGTGGTGGGTTTCCTTTGGGAAGCTTGGTCTTGGTGATGGAAGATGCAGAAGCTCCTCATCACATGCTTTTATTGCGGA
ATTTTATGTCTCAGGGACTTGTTCACAACCAGCCCCTACTTTATGCTAGTCCATCCAGAGACCCAAGAGGATTCCTGGGTACTTTGCCAAGTCCAGGGACATCAAAAGAT
GATAAATCTCGTGACAGTTCTGCCGAACAGGAGAAGGGCTTAAGGATTGCTTGGCAATATAAGAAGTATTTCGGCGACAGCCAAGAGAGCATCAATGCCATGGGTAAGCT
TACTGAGACCTCAGCCTAA
Protein sequenceShow/hide protein sequence
MAATKPRTSSFSRNFSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVMEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKD
DKSRDSSAEQEKGLRIAWQYKKYFGDSQESINAMGKLTETSA