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Spg012636 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012636
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold1:12078100..12081390
RNA-Seq ExpressionSpg012636
SyntenySpg012636
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY10242.1 Uncharacterized protein TCM_025612 [Theobroma cacao]1.1e-0828.25Show/hide
Query:  MSKILEILTAQKGKSTAETHEL-----------EDVAPPGFT-----------PSVPQHS--GASATSVQPIFYTHAPQMPPLGGGASQNLTFP------
        +SKILE+++  KGK  A +  +           + V PPGFT           PS+ Q+S  G    +  P   T+A Q P  G   S  ++ P      
Subjt:  MSKILEILTAQKGKSTAETHEL-----------EDVAPPGFT-----------PSVPQHS--GASATSVQPIFYTHAPQMPPLGGGASQNLTFP------

Query:  IPEQVHSYAQQGQYKEKEPEIH--------SVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHS----
          E+++S+ ++ Q    E  I         +VNM+  + T      K KPL IF++++  G   +      +TI++P  + YKD+KAVPWNY  +     
Subjt:  IPEQVHSYAQQGQYKEKEPEIH--------SVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHS----

Query:  ----LNEEAAIVTNISGISGMTRSGS--IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVDSL
            + E     TNI+ +  +TRSG    P   E  KK K +  +  L           EE V+S +S+
Subjt:  ----LNEEAAIVTNISGISGMTRSGS--IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVDSL

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]8.1e-0934.53Show/hide
Query:  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGS
        +GQ K+ E +   +  ++ E +  KD   P+PL +F++E  +G  T     + L IQ+PS +K+KD KAVPW Y C  +   +  V NI+GISG+TRSG 
Subjt:  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGS

Query:  IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD
            Y+        +D L+LE    +    ++EH +  D
Subjt:  IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]3.6e-0934.51Show/hide
Query:  YAQQGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTR
        Y  QG+ + K+ +I +   ++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KAVPW Y C  +   +  V NI+GISG+TR
Subjt:  YAQQGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTR

Query:  SGSIPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD
        SG     Y+         D L+LE    +    ++EH +  D
Subjt:  SGSIPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]1.2e-2357.14Show/hide
Query:  EIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFK
        E H VNM+  E+ + K   K +PLV+ FKEQ + +  + +I QPLTIQ+PS YKYKDNKAVPW+YGCH+L+EE +IVTNIS +SGMTRSG I +  ET K
Subjt:  EIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFK

Query:  KSKTE
         S+ +
Subjt:  KSKTE

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]3.6e-0946.67Show/hide
Query:  MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGASQNLTFPIPEQVHSYAQQ
        M+KIL++L AQKGK   E     DV           PGFTP V  H+G +    QPIFYT  P M   G GA QN TF + EQVH   QQ
Subjt:  MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGASQNLTFPIPEQVHSYAQQ

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]2.8e-0938.94Show/hide
Query:  PKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYG---CHSLNEE---AAIVTNISGISGMTRSGSIPHLYETFKKSKTEADKLVLEMS
        PKPLV+ +    + +  D    +P+TIQ+P ++ YKDNK VPW YG   C   +EE   A  +TN++GI GMTRSG I  L E   K   E +K   +  
Subjt:  PKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYG---CHSLNEE---AAIVTNISGISGMTRSGSIPHLYETFKKSKTEADKLVLEMS

Query:  DLSITAIIEEHVE
        ++    +I+E  E
Subjt:  DLSITAIIEEHVE

TrEMBL top hitse value%identityAlignment
A0A061F0Q6 Uncharacterized protein5.1e-0928.25Show/hide
Query:  MSKILEILTAQKGKSTAETHEL-----------EDVAPPGFT-----------PSVPQHS--GASATSVQPIFYTHAPQMPPLGGGASQNLTFP------
        +SKILE+++  KGK  A +  +           + V PPGFT           PS+ Q+S  G    +  P   T+A Q P  G   S  ++ P      
Subjt:  MSKILEILTAQKGKSTAETHEL-----------EDVAPPGFT-----------PSVPQHS--GASATSVQPIFYTHAPQMPPLGGGASQNLTFP------

Query:  IPEQVHSYAQQGQYKEKEPEIH--------SVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHS----
          E+++S+ ++ Q    E  I         +VNM+  + T      K KPL IF++++  G   +      +TI++P  + YKD+KAVPWNY  +     
Subjt:  IPEQVHSYAQQGQYKEKEPEIH--------SVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHS----

Query:  ----LNEEAAIVTNISGISGMTRSGS--IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVDSL
            + E     TNI+ +  +TRSG    P   E  KK K +  +  L           EE V+S +S+
Subjt:  ----LNEEAAIVTNISGISGMTRSGS--IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVDSL

A0A5A7T7R4 Ribonuclease H5.1e-0934.53Show/hide
Query:  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGS
        +GQ K+ E +   +  ++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KAVPW Y C  +   +  V NI+GISG+TRSG 
Subjt:  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGS

Query:  IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD
            Y+        +D L+LE    +    ++EH +  D
Subjt:  IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD

A0A5A7TRL7 Ribonuclease H3.9e-0934.53Show/hide
Query:  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGS
        +GQ K+ E +   +  ++ E +  KD   P+PL +F++E  +G  T     + L IQ+PS +K+KD KAVPW Y C  +   +  V NI+GISG+TRSG 
Subjt:  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGS

Query:  IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD
            Y+        +D L+LE    +    ++EH +  D
Subjt:  IPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD

A0A6J1DV70 uncharacterized protein LOC1110243605.6e-2457.14Show/hide
Query:  EIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFK
        E H VNM+  E+ + K   K +PLV+ FKEQ + +  + +I QPLTIQ+PS YKYKDNKAVPW+YGCH+L+EE +IVTNIS +SGMTRSG I +  ET K
Subjt:  EIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFK

Query:  KSKTE
         S+ +
Subjt:  KSKTE

A0A6J1DV70 uncharacterized protein LOC1110243601.8e-0946.67Show/hide
Query:  MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGASQNLTFPIPEQVHSYAQQ
        M+KIL++L AQKGK   E     DV           PGFTP V  H+G +    QPIFYT  P M   G GA QN TF + EQVH   QQ
Subjt:  MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGASQNLTFPIPEQVHSYAQQ

A0A6J1DV70 uncharacterized protein LOC1110243601.8e-0934.51Show/hide
Query:  YAQQGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTR
        Y  QG+ + K+ +I +   ++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KAVPW Y C  +   +  V NI+GISG+TR
Subjt:  YAQQGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTR

Query:  SGSIPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD
        SG     Y+         D L+LE    +    ++EH +  D
Subjt:  SGSIPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAAATCCTGGAGATCCTTACTGCGCAAAAGGGAAAATCTACGGCCGAAACTCATGAACTAGAAGATGTTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCA
TAGCGGGGCATCGGCTACATCTGTGCAACCGATATTCTATACTCATGCACCTCAAATGCCTCCATTAGGAGGAGGGGCAAGTCAAAACCTCACATTTCCCATTCCTGAGC
AAGTCCACTCCTATGCACAACAGGGGCAATATAAGGAAAAGGAACCAGAAATTCATTCTGTAAACATGATCATTGGAGAAGATACCGCAGTAAAAGATTTGTGTAAGCCA
AAACCCCTGGTAATATTTTTTAAGGAACAACTTTCAGGTGTCCAAACTGATTTGACCATCTCACAACCGTTAACTATCCAAATCCCTAGTTCTTACAAATATAAAGACAA
CAAAGCAGTACCATGGAATTATGGTTGTCATAGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGGTATGACAAGGAGTGGAAGCATACCTCATC
TCTACGAGACTTTTAAGAAGAGCAAAACCGAAGCAGACAAGTTAGTATTAGAGATGTCAGATTTATCCATCACCGCCATCATTGAAGAACATGTGGAATCTGTAGATTCC
TTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGGAATCCACAGAATTGCCTATTCATTTTGAAGAAGCCCAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAAATCCTGGAGATCCTTACTGCGCAAAAGGGAAAATCTACGGCCGAAACTCATGAACTAGAAGATGTTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCA
TAGCGGGGCATCGGCTACATCTGTGCAACCGATATTCTATACTCATGCACCTCAAATGCCTCCATTAGGAGGAGGGGCAAGTCAAAACCTCACATTTCCCATTCCTGAGC
AAGTCCACTCCTATGCACAACAGGGGCAATATAAGGAAAAGGAACCAGAAATTCATTCTGTAAACATGATCATTGGAGAAGATACCGCAGTAAAAGATTTGTGTAAGCCA
AAACCCCTGGTAATATTTTTTAAGGAACAACTTTCAGGTGTCCAAACTGATTTGACCATCTCACAACCGTTAACTATCCAAATCCCTAGTTCTTACAAATATAAAGACAA
CAAAGCAGTACCATGGAATTATGGTTGTCATAGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGGTATGACAAGGAGTGGAAGCATACCTCATC
TCTACGAGACTTTTAAGAAGAGCAAAACCGAAGCAGACAAGTTAGTATTAGAGATGTCAGATTTATCCATCACCGCCATCATTGAAGAACATGTGGAATCTGTAGATTCC
TTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGGAATCCACAGAATTGCCTATTCATTTTGAAGAAGCCCAAGAGTAA
Protein sequenceShow/hide protein sequence
MSKILEILTAQKGKSTAETHELEDVAPPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGASQNLTFPIPEQVHSYAQQGQYKEKEPEIHSVNMIIGEDTAVKDLCKP
KPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVDS
LVYKCPPGFELCNWESTELPIHFEEAQE