; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg012675 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012675
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:18161400..18163309
RNA-Seq ExpressionSpg012675
SyntenySpg012675
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]3.4e-2843.26Show/hide
Query:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE
        ++QFGT EP+VV+F +    E  QEK   IE+++EGWTIV RRKKR+ + ++KE R +R+ ++  K+Q+ K KKK+R+ K + +E++DF    + +TLA+
Subjt:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE

Query:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADA
        +FP RFL D Q E    V CH ++ +E++++P  S        DLS F++ DLLSLPQE K +LI AL+ S    + A
Subjt:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADA

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]3.1e-2159.41Show/hide
Query:  LVKPKKKLLKEGYSLPTSRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNST
        L   +KKLL+EG+ +P SRKGLGYKSPEP+RITR+GK KV D+NHITV+EVD  +E +   +RTS F RI P VAR  VFERLS+ E E +  Q T+N  
Subjt:  LVKPKKKLLKEGYSLPTSRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNST

Query:  R
        R
Subjt:  R

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]7.6e-2842.39Show/hide
Query:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE
        ++QFGT EPIVVQF +    E    K  SIE++NEGW +V RR KR+ +  +KES  +R+ +R+ K+Q+ K KKK+R+ K + +E++DF  P + +T+A+
Subjt:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE

Query:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADARKEAIE
         FP RFL D Q E  E +TCH ++  E++ +P+ S        +LS F++ DLLSLPQE K++LI AL+ S    +     A E
Subjt:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADARKEAIE

KAA0051157.1 uncharacterized protein E6C27_scaffold511G001100 [Cucumis melo var. makuwa]8.4e-2743.82Show/hide
Query:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE
        ++ FGT EP+VVQF +    E  QEK  SIE+ +EGW +V RRKKR+ + ++KESR +R+ +R  K+Q  K KKK+R+ K   KE++DF  P + +TLA+
Subjt:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE

Query:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADA
        +F  RFL D Q E  + V CH ++  E++ +P  S        DLS F++ DLLSLPQE K + I AL+ S    + A
Subjt:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADA

KAA0051157.1 uncharacterized protein E6C27_scaffold511G001100 [Cucumis melo var. makuwa]1.5e-0753.73Show/hide
Query:  ITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNN
        I R+GK  V D  HIT+EEVD  +EK+   +R SVF RIRP VAR  +FERLS+ ETE +  Q T++
Subjt:  ITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNN

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-2946.78Show/hide
Query:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE
        ++QFGT EP+VVQF +    E  QEK  SIE ++EGWTIV RRKKR+ + ++KE R +R+ +R  K+Q+ K KKK+++ K I +E++DF    + +TLA 
Subjt:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE

Query:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIES
        +FP RFL D Q E  E V CH +D +E++ +P  S        DL  F++ DLLSLPQE K++LI AL+ S
Subjt:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIES

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-3127.53Show/hide
Query:  QFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAEYF
        +FGT EP+VV+F +    E  QEK   IE+++E WTIV RRKKR+ + ++KE R +R+ +R  K+Q+ K KKK+R+ K + KE++DF    + ITLA++F
Subjt:  QFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAEYF

Query:  PRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIES-------------------------DE----
        P RFL D Q E    V CH ++  E++ +P  S        DLS F++ DLLSLPQE K++LI AL+ S                         D+    
Subjt:  PRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIES-------------------------DE----

Query:  ---------------------------------PQADARK--------------------------EAIEDVEA------------SDLK----------
                                         P++  R+                          + ++ VEA            +D K          
Subjt:  ---------------------------------PQADARK--------------------------EAIEDVEA------------SDLK----------

Query:  -----------------------------------KGETSTSLVK-------------------------------------------------------
                                           K E STS  K                                                       
Subjt:  -----------------------------------KGETSTSLVK-------------------------------------------------------

Query:  -----------------------------------------------------PK-----KKLLKEGYSLPTSRKGLGYKSPEPVRITRRGKAKVADTNH
                                                             PK     KKLL+EG+++P SRKGLGYK PEP+RITR+GK K+ D+NH
Subjt:  -----------------------------------------------------PK-----KKLLKEGYSLPTSRKGLGYKSPEPVRITRRGKAKVADTNH

Query:  ITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNSTR----PRFSLSLFSHLFSP
        ITV+EVD  KEK+   +RTS F RI P VARA VFERLSV E E +  Q T+N  R     R S++   H  +P
Subjt:  ITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNSTR----PRFSLSLFSHLFSP

TrEMBL top hitse value%identityAlignment
A0A5D3BE72 Ty3-gypsy retrotransposon protein6.7e-3046.78Show/hide
Query:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE
        ++QFGT EP+VVQF +    E  QEK  SIE ++EGWTIV RRKKR+ + ++KE R +R+ +R  K+Q+ K KKK+++ K I +E++DF    + +TLA 
Subjt:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE

Query:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIES
        +FP RFL D Q E  E V CH +D +E++ +P  S        DL  F++ DLLSLPQE K++LI AL+ S
Subjt:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIES

A0A5D3BSG5 Uncharacterized protein1.7e-2843.26Show/hide
Query:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE
        ++QFGT EP+VV+F +    E  QEK   IE+++EGWTIV RRKKR+ + ++KE R +R+ ++  K+Q+ K KKK+R+ K + +E++DF    + +TLA+
Subjt:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE

Query:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADA
        +FP RFL D Q E    V CH ++ +E++++P  S        DLS F++ DLLSLPQE K +LI AL+ S    + A
Subjt:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADA

A0A5D3BSG5 Uncharacterized protein1.5e-2159.41Show/hide
Query:  LVKPKKKLLKEGYSLPTSRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNST
        L   +KKLL+EG+ +P SRKGLGYKSPEP+RITR+GK KV D+NHITV+EVD  +E +   +RTS F RI P VAR  VFERLS+ E E +  Q T+N  
Subjt:  LVKPKKKLLKEGYSLPTSRKGLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNST

Query:  R
        R
Subjt:  R

A0A5D3BSG5 Uncharacterized protein3.7e-2842.39Show/hide
Query:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE
        ++QFGT EPIVVQF +    E    K  SIE++NEGW +V RR KR+ +  +KES  +R+ +R+ K+Q+ K KKK+R+ K + +E++DF  P + +T+A+
Subjt:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE

Query:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADARKEAIE
         FP RFL D Q E  E +TCH ++  E++ +P+ S        +LS F++ DLLSLPQE K++LI AL+ S    +     A E
Subjt:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADARKEAIE

A0A5D3BY10 Uncharacterized protein4.1e-2743.82Show/hide
Query:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE
        ++ FGT EP+VVQF +    E  QEK  SIE+ +EGW +V RRKKR+ + ++KESR +R+ +R  K+Q  K KKK+R+ K   KE++DF  P + +TLA+
Subjt:  MIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAE

Query:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADA
        +F  RFL D Q E  + V CH ++  E++ +P  S        DLS F++ DLLSLPQE K + I AL+ S    + A
Subjt:  YFPRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADA

A0A5D3BY10 Uncharacterized protein7.3e-0853.73Show/hide
Query:  ITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNN
        I R+GK  V D  HIT+EEVD  +EK+   +R SVF RIRP VAR  +FERLS+ ETE +  Q T++
Subjt:  ITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNN

A0A5D3C0W6 Ty3-gypsy retrotransposon protein2.1e-3127.53Show/hide
Query:  QFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAEYF
        +FGT EP+VV+F +    E  QEK   IE+++E WTIV RRKKR+ + ++KE R +R+ +R  K+Q+ K KKK+R+ K + KE++DF    + ITLA++F
Subjt:  QFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAEYF

Query:  PRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIES-------------------------DE----
        P RFL D Q E    V CH ++  E++ +P  S        DLS F++ DLLSLPQE K++LI AL+ S                         D+    
Subjt:  PRRFLDDSQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIES-------------------------DE----

Query:  ---------------------------------PQADARK--------------------------EAIEDVEA------------SDLK----------
                                         P++  R+                          + ++ VEA            +D K          
Subjt:  ---------------------------------PQADARK--------------------------EAIEDVEA------------SDLK----------

Query:  -----------------------------------KGETSTSLVK-------------------------------------------------------
                                           K E STS  K                                                       
Subjt:  -----------------------------------KGETSTSLVK-------------------------------------------------------

Query:  -----------------------------------------------------PK-----KKLLKEGYSLPTSRKGLGYKSPEPVRITRRGKAKVADTNH
                                                             PK     KKLL+EG+++P SRKGLGYK PEP+RITR+GK K+ D+NH
Subjt:  -----------------------------------------------------PK-----KKLLKEGYSLPTSRKGLGYKSPEPVRITRRGKAKVADTNH

Query:  ITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNSTR----PRFSLSLFSHLFSP
        ITV+EVD  KEK+   +RTS F RI P VARA VFERLSV E E +  Q T+N  R     R S++   H  +P
Subjt:  ITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNSTR----PRFSLSLFSHLFSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATTCAATTTGGGACCCTTGAGCCCATAGTTGTTCAATTCCAAAAAAGAAGCCACAATGAAGGGATCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGG
TTGGACCATTGTCGTTCGTCGCAAAAAGCGAAGACAAAGTTACGTACGGAAGGAGTCCCGCTTATTTCGAGATAGTAAAAGAAAAGTTAAATCTCAAAGGAAGAAGGGAA
AAAAGAAGTCAAGGAGGTCAAAGCCTATCGTGAAGGAAAATGAAGATTTCTTTTGCCCTCTACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTTGATGAT
AGTCAAAGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTTCCTACTAGCTCCTCGGGAACGGTGGCAAGTCCAGGAGATTTATC
CTCCTTCAGCATAAAAGACTTATTGTCACTTCCTCAGGAAGATAAAAGTGTCCTTATTGTTGCATTGATAGAGTCTGATGAACCACAAGCTGATGCAAGAAAGGAAGCTA
TTGAAGATGTGGAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCTACATCAAGAAAA
GGACTTGGATATAAGTCGCCTGAGCCGGTTCGCATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATATAACGGTAGAGGAGGTTGATGACTCAAAAGAAAA
AAAGAGTGTCGACAGACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTGAGAGATTAAGTGTGAATGAAACGGAAGAAGAAAGCGCAC
AACCTACCAATAACTCCACTCGACCTAGGTTTTCTCTTTCACTTTTTTCCCATTTGTTCTCACCTTGCAACTATAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATTCAATTTGGGACCCTTGAGCCCATAGTTGTTCAATTCCAAAAAAGAAGCCACAATGAAGGGATCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGG
TTGGACCATTGTCGTTCGTCGCAAAAAGCGAAGACAAAGTTACGTACGGAAGGAGTCCCGCTTATTTCGAGATAGTAAAAGAAAAGTTAAATCTCAAAGGAAGAAGGGAA
AAAAGAAGTCAAGGAGGTCAAAGCCTATCGTGAAGGAAAATGAAGATTTCTTTTGCCCTCTACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTTGATGAT
AGTCAAAGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTTCCTACTAGCTCCTCGGGAACGGTGGCAAGTCCAGGAGATTTATC
CTCCTTCAGCATAAAAGACTTATTGTCACTTCCTCAGGAAGATAAAAGTGTCCTTATTGTTGCATTGATAGAGTCTGATGAACCACAAGCTGATGCAAGAAAGGAAGCTA
TTGAAGATGTGGAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAGAAGAAGCTTCTAAAGGAAGGTTATAGTCTGCCTACATCAAGAAAA
GGACTTGGATATAAGTCGCCTGAGCCGGTTCGCATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATATAACGGTAGAGGAGGTTGATGACTCAAAAGAAAA
AAAGAGTGTCGACAGACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTTAGTCTTTGAGAGATTAAGTGTGAATGAAACGGAAGAAGAAAGCGCAC
AACCTACCAATAACTCCACTCGACCTAGGTTTTCTCTTTCACTTTTTTCCCATTTGTTCTCACCTTGCAACTATAGATAA
Protein sequenceShow/hide protein sequence
MMIQFGTLEPIVVQFQKRSHNEGIQEKYDSIEDENEGWTIVVRRKKRRQSYVRKESRLFRDSKRKVKSQRKKGKKKSRRSKPIVKENEDFFCPLQPITLAEYFPRRFLDD
SQREALETVTCHIVDVVEDDDVPTSSSGTVASPGDLSSFSIKDLLSLPQEDKSVLIVALIESDEPQADARKEAIEDVEASDLKKGETSTSLVKPKKKLLKEGYSLPTSRK
GLGYKSPEPVRITRRGKAKVADTNHITVEEVDDSKEKKSVDRRTSVFRRIRPPVARALVFERLSVNETEEESAQPTNNSTRPRFSLSLFSHLFSPCNYR