; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg012740 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012740
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionla-related protein 1C-like
Genome locationscaffold1:5113633..5117551
RNA-Seq ExpressionSpg012740
SyntenySpg012740
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603893.1 La-related protein 1C, partial [Cucurbita argyrosperma subsp. sororia]6.1e-4477.69Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTENI TILDALQSST++EVKG+ VRRR+DYDRWIIRPGQVPN+A+P SP SSNQDML AGVQGIALE  NHR SEGG GDV VEALH+SRP GNL
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
        S+QAQP G D  G VNTKAG  D SSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
XP_022926424.1 la-related protein 1C-like [Cucurbita moschata]4.0e-4376.15Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTE+IP ILDALQSS+++EVKGETVRRR+DYDRWIIRPG++P+VA P SPGSSNQDMLAAGVQ IALE  NHR SEGG G V VEA  +SRP GNL
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
        S  AQPYG +GT  VNTKAGS DHSSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
XP_022949955.1 la-related protein 1C-like isoform X1 [Cucurbita moschata]8.0e-4477.69Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTENI TILDALQSST++EVKG+ VRRR+DYDRWIIRPGQVPN+A+P SP SSNQDMLAAGVQGIALE  NHR SEGG GDV VEALH+ RP GNL
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
        S+QAQP G D  G VNTKAG  D SSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
XP_023517528.1 la-related protein 1C-like [Cucurbita pepo subsp. pepo]5.2e-4375.38Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTE+IP ILDALQSS+++EVKGETVRRR+DYDRWIIRPG++P+VA P SPGSSNQDMLAAGVQ IALE  NHR SEGG G V VEA  +SRP GN+
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
        S+ AQPYG +GT  VNTKAGS DHSSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
XP_023522714.1 la-related protein 1C-like [Cucurbita pepo subsp. pepo]5.2e-4375.38Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTE+IP ILDALQSS+++EVKGETVRRR+DYDRWIIRPG++P+VA P SPGSSNQDMLAAGVQ IALE  NHR SEGG G V VEA  +SRP GN+
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
        S+ AQPYG +GT  VNTKAGS DHSSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
TrEMBL top hitse value%identityAlignment
A0A6J1BT89 la-related protein 1C-like3.2e-3870.99Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIR-PGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGN
        +V  LT+NI  ILD+LQSSTV+E KG+ VRRR+DYDRWIIR P Q PNVA P SPGS NQDMLAAGVQ I+LE NNH  +EGG GD  VEALH+ RP+ N
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIR-PGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGN

Query:  LSVQAQPYGVDGTGPVNTKAGSADHSSSERS
        LS Q QPYG DGTG VN K GS DHSSSERS
Subjt:  LSVQAQPYGVDGTGPVNTKAGSADHSSSERS
A0A6J1EF26 la-related protein 1C-like1.9e-4376.15Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTE+IP ILDALQSS+++EVKGETVRRR+DYDRWIIRPG++P+VA P SPGSSNQDMLAAGVQ IALE  NHR SEGG G V VEA  +SRP GNL
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
        S  AQPYG +GT  VNTKAGS DHSSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
A0A6J1GDH3 la-related protein 1C-like isoform X24.3e-3570Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTENI TILDALQSST++EVKG+ VRRR+DYDRWIIRPGQVPN+A+P SP SSNQDMLAAGVQGIALE  NHR SEGG GDV VE           
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
           AQP G D  G VNTKAG  D SSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
A0A6J1GE82 la-related protein 1C-like isoform X13.9e-4477.69Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTENI TILDALQSST++EVKG+ VRRR+DYDRWIIRPGQVPN+A+P SP SSNQDMLAAGVQGIALE  NHR SEGG GDV VEALH+ RP GNL
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
        S+QAQP G D  G VNTKAG  D SSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
A0A6J1KQG8 la-related protein 1C-like5.6e-4374.62Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL
        +VK LTE+IP ILDALQSS+++EVKGETVRRR+DYDRWIIRPG++P+VA P SPGSSNQDMLAAGVQ IALE  NHR SEGG G V V+A  +SRP GNL
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNL

Query:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
        S+ AQPYG +GT  VNTK GS DHSSSERS
Subjt:  SVQAQPYGVDGTGPVNTKAGSADHSSSERS
SwissProt top hitse value%identityAlignment
Q8RWR2 La-related protein 1B4.8e-0740.79Show/hide
Query:  LTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSP--GSSNQDMLAAGVQGIALEKNNHRG
        LT NI TIL+AL+SS V+E++GET+RRR D+D++++     P   S S P  G+SN   L + ++ + L + +  G
Subjt:  LTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSP--GSSNQDMLAAGVQGIALEKNNHRG
Arabidopsis top hitse value%identityAlignment
AT4G35890.1 winged-helix DNA-binding transcription factor family protein3.9e-0437.74Show/hide
Query:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSS
        +V  LT+NI  I++ALQ+S  +EV+G+ +R+R ++  W++R  + P  + P S
Subjt:  EVKNLTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSS
AT5G66100.1 winged-helix DNA-binding transcription factor family protein3.4e-0840.79Show/hide
Query:  LTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSP--GSSNQDMLAAGVQGIALEKNNHRG
        LT NI TIL+AL+SS V+E++GET+RRR D+D++++     P   S S P  G+SN   L + ++ + L + +  G
Subjt:  LTENIPTILDALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSP--GSSNQDMLAAGVQGIALEKNNHRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGGCAGTTCTTCACGGAGTCAACATGTTGTGGTATAGAGTAATTGTGCTATGTTGGGGAGGGCTCAAAAGTTTGTTTTTGGGAGGACCATGGGTGGGACATTG
CATGTCTTATTTCCACGACTTTACTTTCTTTCCCACAAGAGGTTGCATTCGGTGGCTTTGGTGTTTACGTTCTCCTAACCATTCTTCTTCAATCTCTTTACGTTTTTGTC
GTCCTCTGATTGGCAAGGAGGCGATTGACGTGGTGGGTCTTCTTTATCTCATTCAGGATCAGTTTATTTCTCCAAGGAGGAGGGATGCTAGGGTTTGGACCTTTGATCCT
TCTAGGAGCTTCTCTTGCCACTTCTATTTTCGTTCTATATTTCCCTTCGCTTTCCTTAATAGGCTAATACCTTGGATCATGAGGCGTGAGGAGAACCTGAATCATTTGTT
GTGGTCTGTGGGATTGCTAATTTGCAAACTACCTGTGGGATTGCCGGGATGCAAACTACCTTTGGAGTCGTTGGAAGAGTTTGCTTCCTTGTATGATTGTTATATCATTT
TCCCTTCGTTTTATGTGAATCATGTTTCATCATGCATGTCATCACATGTTTTGGGCGTTGTGGCATATGAGGTTAAAAATCTTACTGAAAATATCCCAACTATATTGGAT
GCATTGCAATCATCTACAGTGTTGGAAGTAAAGGGAGAGACTGTAAGGAGGCGACATGATTATGATAGATGGATTATTCGACCTGGTCAAGTTCCTAATGTTGCCAGCCC
ATCAAGCCCAGGGAGTTCCAATCAGGATATGTTGGCAGCTGGTGTTCAAGGTATTGCACTAGAGAAAAATAATCATAGGGGCTCTGAAGGTGGACATGGTGATGTTGATG
TGGAGGCACTCCATAACAGTAGGCCATATGGAAATTTGAGTGTGCAGGCACAGCCATATGGTGTTGATGGTACAGGCCCAGTAAATACCAAGGCAGGTTCAGCAGATCAT
TCATCTTCTGAAAGGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGGCAGTTCTTCACGGAGTCAACATGTTGTGGTATAGAGTAATTGTGCTATGTTGGGGAGGGCTCAAAAGTTTGTTTTTGGGAGGACCATGGGTGGGACATTG
CATGTCTTATTTCCACGACTTTACTTTCTTTCCCACAAGAGGTTGCATTCGGTGGCTTTGGTGTTTACGTTCTCCTAACCATTCTTCTTCAATCTCTTTACGTTTTTGTC
GTCCTCTGATTGGCAAGGAGGCGATTGACGTGGTGGGTCTTCTTTATCTCATTCAGGATCAGTTTATTTCTCCAAGGAGGAGGGATGCTAGGGTTTGGACCTTTGATCCT
TCTAGGAGCTTCTCTTGCCACTTCTATTTTCGTTCTATATTTCCCTTCGCTTTCCTTAATAGGCTAATACCTTGGATCATGAGGCGTGAGGAGAACCTGAATCATTTGTT
GTGGTCTGTGGGATTGCTAATTTGCAAACTACCTGTGGGATTGCCGGGATGCAAACTACCTTTGGAGTCGTTGGAAGAGTTTGCTTCCTTGTATGATTGTTATATCATTT
TCCCTTCGTTTTATGTGAATCATGTTTCATCATGCATGTCATCACATGTTTTGGGCGTTGTGGCATATGAGGTTAAAAATCTTACTGAAAATATCCCAACTATATTGGAT
GCATTGCAATCATCTACAGTGTTGGAAGTAAAGGGAGAGACTGTAAGGAGGCGACATGATTATGATAGATGGATTATTCGACCTGGTCAAGTTCCTAATGTTGCCAGCCC
ATCAAGCCCAGGGAGTTCCAATCAGGATATGTTGGCAGCTGGTGTTCAAGGTATTGCACTAGAGAAAAATAATCATAGGGGCTCTGAAGGTGGACATGGTGATGTTGATG
TGGAGGCACTCCATAACAGTAGGCCATATGGAAATTTGAGTGTGCAGGCACAGCCATATGGTGTTGATGGTACAGGCCCAGTAAATACCAAGGCAGGTTCAGCAGATCAT
TCATCTTCTGAAAGGAGTTAG
Protein sequenceShow/hide protein sequence
MVVAVLHGVNMLWYRVIVLCWGGLKSLFLGGPWVGHCMSYFHDFTFFPTRGCIRWLWCLRSPNHSSSISLRFCRPLIGKEAIDVVGLLYLIQDQFISPRRRDARVWTFDP
SRSFSCHFYFRSIFPFAFLNRLIPWIMRREENLNHLLWSVGLLICKLPVGLPGCKLPLESLEEFASLYDCYIIFPSFYVNHVSSCMSSHVLGVVAYEVKNLTENIPTILD
ALQSSTVLEVKGETVRRRHDYDRWIIRPGQVPNVASPSSPGSSNQDMLAAGVQGIALEKNNHRGSEGGHGDVDVEALHNSRPYGNLSVQAQPYGVDGTGPVNTKAGSADH
SSSERS