| GenBank top hits | e value | %identity | Alignment |
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| XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] | 1.3e-256 | 89.42 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQA EWP LLSSWPSLQM EYKISS K+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD SS DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLAAYADLLT
YKLKRCCNSQGL AYADLLT
Subjt: YKLKRCCNSQGLAAYADLLT
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| XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo] | 1.3e-256 | 89.42 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQA EWP LLSSWPSLQM EYKISS K+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD SS DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLAAYADLLT
YKLKRCCNSQGL AYADLLT
Subjt: YKLKRCCNSQGLAAYADLLT
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| XP_022143971.1 RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia] | 1.5e-265 | 91.98 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
V M H+QATPARYFSTSF+ QEQHHECRPQSQ+LK+DKTSQMTLDRRLIERSVS DE SR GHDHLVWELKHQA EWPGLLSSWPSLQMGEYKISSV KQ
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTD-REVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSS---DSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRR
NNT RE+LVEDEPE+VIALAKKALSASKQ ASLV+ESELVGT++DSSSSS DSL KE VKST+LQDRRSK+RRVPKHVTTIHETYN RGKDTRR
Subjt: SNNTD-REVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSS---DSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRR
Query: KTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
KT+ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIA
Subjt: KTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
Query: KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITV
KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GN KPSKEELAAHVGITV
Subjt: KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITV
Query: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE
ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLE
Subjt: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE
Query: NRALYKLKRCCNSQGLAAYADLLT
NRALYKLKRCCNSQGL AYADLLT
Subjt: NRALYKLKRCCNSQGLAAYADLLT
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| XP_031742499.1 RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] | 2.8e-267 | 87.19 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCS-----SSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEE
MEAGLNLLSSSSPFISRCHPRSFL PSCS SSSSSSSSV MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D++SQMTL+RRLIERSV DE
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCS-----SSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEE
Query: SRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQ
SR HDHL+WELKHQA EWPGLLSSWP +QM EYKISS+ K+S N E+LV+DEPENVIALAKKALSASKQ A LVDE+ELVGT LD SS DSLSKE
Subjt: SRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQ
Query: RTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
RTV+ST+LQDRRSKKR+VPKHVTTI E N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
Query: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAK+YQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
ENVY LLGKVTEAKNYFVRAGN KPSKEELAA VGITVER DKL+FMSRIPRSLQQPVWADQ+TTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
Subjt: ENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
Query: KERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT
KERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Subjt: KERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT
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| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 2.0e-278 | 91.38 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGH
MEAGLNLLSSSS FISRCHPRSFLHPSC SSSSSSSSVSMFHEQA PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQ TLDRRLIERSVS DE +RS H
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGH
Query: DHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKS
DHL+WE KHQA EWPGLLSSWPSLQM EYKISSV KQS N E+LV+DEPENVIALAKKALSASKQ ASLVDESELVGT+LD +S DSLSKE RTV+S
Subjt: DHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKS
Query: TKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
T+LQDRRSKKR+VPKHVTTIHET N +GKD+RRKT ENFDPNDPLRLFLWGPETKKLLTV+EESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
Subjt: TKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
Query: GLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
GLTCQRLQSQL SFR+SREKLINANLRMVVHIAK+YQGRGLSL DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
Subjt: GLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
Query: LLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRI
LLGKVTEAKNYFVRAGN KPSKEELAA VGITVERLDKLLFMSRIPRSLQQPVW DQDTTFQEITADSE+DTPDVSVERELMRRHIRNLLSILSPKERRI
Subjt: LLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRI
Query: IRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT
IRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRC NSQGL AYADLLT
Subjt: IRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0KEQ6 RNA polymerase sigma factor | 1.3e-267 | 87.19 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCS-----SSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEE
MEAGLNLLSSSSPFISRCHPRSFL PSCS SSSSSSSSV MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D++SQMTL+RRLIERSV DE
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCS-----SSSSSSSSVSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEE
Query: SRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQ
SR HDHL+WELKHQA EWPGLLSSWP +QM EYKISS+ K+S N E+LV+DEPENVIALAKKALSASKQ A LVDE+ELVGT LD SS DSLSKE
Subjt: SRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQ
Query: RTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
RTV+ST+LQDRRSKKR+VPKHVTTI E N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
Query: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAK+YQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
ENVY LLGKVTEAKNYFVRAGN KPSKEELAA VGITVER DKL+FMSRIPRSLQQPVWADQ+TTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
Subjt: ENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSP
Query: KERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT
KERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGL AYADLLT
Subjt: KERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLLT
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| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 6.2e-257 | 89.42 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQA EWP LLSSWPSLQM EYKISS K+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD SS DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLAAYADLLT
YKLKRCCNSQGL AYADLLT
Subjt: YKLKRCCNSQGLAAYADLLT
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| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 6.2e-257 | 89.42 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQA EWP LLSSWPSLQM EYKISS K+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD SS DSLSKE RTV+ST+LQDRRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLAAYADLLT
YKLKRCCNSQGL AYADLLT
Subjt: YKLKRCCNSQGLAAYADLLT
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| A0A5A7V893 RNA polymerase sigma factor sigF | 1.8e-256 | 89.23 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
V MF EQA+PARYFSTSFLSQEQHHECRPQSQ+LK+D+TSQMTLDRRLIERSV DE SRS HDHL+WELKHQA EWP LLSSWPSLQM EYKISS K+
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
S N E+LV+DEPENVIALAKKALSASKQ A LVDESELVGT LD SS DSLSKE RTV+ST+LQ+RRSKKR+VPKHVTTIHET N RGKD+RRKTSE
Subjt: SNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAK+Y
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVERLD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLAAYADLLT
YKLKRCCNSQGL AYADLLT
Subjt: YKLKRCCNSQGLAAYADLLT
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| A0A6J1CRW8 RNA polymerase sigma factor sigF, chloroplastic | 7.3e-266 | 91.98 | Show/hide |
Query: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
V M H+QATPARYFSTSF+ QEQHHECRPQSQ+LK+DKTSQMTLDRRLIERSVS DE SR GHDHLVWELKHQA EWPGLLSSWPSLQMGEYKISSV KQ
Subjt: VSMFHEQATPARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERSVSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQ
Query: SNNTD-REVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSS---DSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRR
NNT RE+LVEDEPE+VIALAKKALSASKQ ASLV+ESELVGT++DSSSSS DSL KE VKST+LQDRRSK+RRVPKHVTTIHETYN RGKDTRR
Subjt: SNNTD-REVLVEDEPENVIALAKKALSASKQVASLVDESELVGTDLDSSSSS---DSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYN-RGKDTRR
Query: KTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
KT+ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIA
Subjt: KTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
Query: KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITV
KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GN KPSKEELAAHVGITV
Subjt: KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITV
Query: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE
ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLE
Subjt: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE
Query: NRALYKLKRCCNSQGLAAYADLLT
NRALYKLKRCCNSQGL AYADLLT
Subjt: NRALYKLKRCCNSQGLAAYADLLT
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 3.2e-64 | 34.68 | Show/hide |
Query: KISSVVKQSNNTDR------------EVLVEDEPENV---IALAKKALSASKQVASLVDESELVGTDLDSSSSSD-SLSKEQRT----VKSTKLQDRRSK
K +++ K SNNT+ + E E + +A++ + + K AS E +G DL+S + L +EQ + V+ST+ +R+++
Subjt: KISSVVKQSNNTDR------------EVLVEDEPENV---IALAKKALSASKQVASLVDESELVGTDLDSSSSSD-SLSKEQRT----VKSTKLQDRRSK
Query: KRRVPKHVTTIHETYNRGKDTRRK--TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQ
+ + + + + G ++K ++ D NDPLR + KLLTV+EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ + L+
Subjt: KRRVPKHVTTIHETYNRGKDTRRK--TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQ
Query: SQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA
++H + ++K+I +N+R+V+ IAK YQG G++L DL+QEG GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA
Subjt: SQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA
Query: KNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIE
+ P EE+A G++++RL +L + PRSL Q + +Q+ E+ AD E T + + +E MR+ + +L L +E+++IR RFG+E
Subjt: KNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIE
Query: DGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAY
DG+ KTL EIG M G+S+ERVRQ+E+ A KLK + L Y
Subjt: DGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAY
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| P26683 RNA polymerase sigma factor SigA | 2.7e-63 | 39.25 | Show/hide |
Query: RRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVH
R ++ + D +RL+L +LL EE EL +I DL+ L+ V+ RL + R+P EWAEA+ L + +LH R +++K++ +NLR+VV
Subjt: RRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVH
Query: IAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGI
IAKKY RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + KP++EE+A + +
Subjt: IAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGI
Query: TVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQ
T+E+L + +++P SL+ P+ ++D+ + +S+ +TP+ V + L+R + +L LSP+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ
Subjt: TVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQ
Query: LENRALYKLKRCCNSQGLAAY
+E +AL KL+ + L Y
Subjt: LENRALYKLKRCCNSQGLAAY
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| P38023 RNA polymerase sigma factor SigA1 | 6.6e-62 | 41.33 | Show/hide |
Query: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLS
D +RL+L +LL EE EL QI DL+ L+ ++ L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAKKY RGLS
Subjt: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLS
Query: LHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFM
DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + KP++EE+A + +T+E+L +
Subjt: LHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFM
Query: SRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
+++P SL+ P+ ++D+ + I AD E TP+ V + L+R + +LS LSP+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E +AL KL+
Subjt: SRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
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| Q31ME3 RNA polymerase sigma factor SigA2 | 3.2e-56 | 39.81 | Show/hide |
Query: TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAK
+S + P D +R +L +LLT +EE Q+Q LM+L + + L+ + G EP+ EWA A+ L + L Q+ + ++ K+I ANLR+VV IAK
Subjt: TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAK
Query: KYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVE
KYQ R + DL+QEG+LGL + VEKF P G +F+TYAYWWIRQ+I +AI + SRTIRLP ++ L K+ + + + + ELA + + +E
Subjt: KYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVE
Query: RLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLEN
++ + + M+R P SL V QDT QE+ D E +P VE+E +RR +RNL++ L+P+++ +I LR+G+++G +L ++G +S+ERVR+LE
Subjt: RLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLEN
Query: RALYKLKRCCNSQGLAAYA
+A+ L+R S+ LA YA
Subjt: RALYKLKRCCNSQGLAAYA
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 1.6e-148 | 54.47 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATP-----------ARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERS
MEA NL+SSS F ++ H SS SS SSV M H+Q T +R+F S LSQE E RP S L++D+TSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATP-----------ARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERS
Query: VSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGT----DLDSS
VS E+ + +L H W L+S S E K+ +VV L + E +V+ALA+KALSASKQ A LVD++E + D S+
Subjt: VSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGT----DLDSS
Query: SSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGK-DTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS
SSS SL ++ V+S + +RR+K RR PK E Y K ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L+S
Subjt: SSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGK-DTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS
Query: QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Q G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAK+YQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+I
Subjt: QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Query: FEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRH
F++SRTIRLPENVY LLGKV+EA+ V+ GN +PSKEELA HVG++ E+LDKLL+ +R P S+QQP+W+DQDTTFQEIT DS ++TP +SV ++LMR H
Subjt: FEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRH
Query: IRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLL
+RNLL++LSPKERRII+LRFGI+ GK+++L EIG ++GLSKERVRQLE+RALY+LK+ NS GL AYADLL
Subjt: IRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 2.2e-65 | 34.68 | Show/hide |
Query: KISSVVKQSNNTDR------------EVLVEDEPENV---IALAKKALSASKQVASLVDESELVGTDLDSSSSSD-SLSKEQRT----VKSTKLQDRRSK
K +++ K SNNT+ + E E + +A++ + + K AS E +G DL+S + L +EQ + V+ST+ +R+++
Subjt: KISSVVKQSNNTDR------------EVLVEDEPENV---IALAKKALSASKQVASLVDESELVGTDLDSSSSSD-SLSKEQRT----VKSTKLQDRRSK
Query: KRRVPKHVTTIHETYNRGKDTRRK--TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQ
+ + + + + G ++K ++ D NDPLR + KLLTV+EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ + L+
Subjt: KRRVPKHVTTIHETYNRGKDTRRK--TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQ
Query: SQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA
++H + ++K+I +N+R+V+ IAK YQG G++L DL+QEG GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA
Subjt: SQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA
Query: KNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIE
+ P EE+A G++++RL +L + PRSL Q + +Q+ E+ AD E T + + +E MR+ + +L L +E+++IR RFG+E
Subjt: KNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIE
Query: DGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAY
DG+ KTL EIG M G+S+ERVRQ+E+ A KLK + L Y
Subjt: DGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAY
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| AT1G64860.1 sigma factor A | 1.3e-33 | 29.97 | Show/hide |
Query: TRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVV
T K + +R ++ G ++ +L+ E L +I+ + LD+ K+RL+ + G EP+ + A +L ++ LQ+ L ++REKL +N+R+V+
Subjt: TRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVV
Query: HIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVG
IA++Y G + DL+Q G +GL++ +EKF G R +TY YWWIRQ + +A+ ++SRT+RLP +++ LG + AK G + PS + +A +
Subjt: HIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVG
Query: ITVERLDKLLFMSRIPRSLQQPVWADQD----TTFQEITADSEVD-TPDVSVERELMRRHIRNLLS-ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGL
++ +++ SL + + + T AD+ ++ P + ++ + L+S L +E+ IIRL +G+ D + T +I GL
Subjt: ITVERLDKLLFMSRIPRSLQQPVWADQD----TTFQEITADSEVD-TPDVSVERELMRRHIRNLLS-ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGL
Query: SKERVRQLENRALYKLKRCCNSQGLAA
S+ERVRQ+ AL KLK + + A
Subjt: SKERVRQLENRALYKLKRCCNSQGLAA
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.1e-149 | 54.47 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATP-----------ARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERS
MEA NL+SSS F ++ H SS SS SSV M H+Q T +R+F S LSQE E RP S L++D+TSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSCSSSSSSSSSVSMFHEQATP-----------ARYFSTSFLSQEQHHECRPQSQMLKNDKTSQMTLDRRLIERS
Query: VSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGT----DLDSS
VS E+ + +L H W L+S S E K+ +VV L + E +V+ALA+KALSASKQ A LVD++E + D S+
Subjt: VSFDEESRSGHDHLVWELKHQADEWPGLLSSWPSLQMGEYKISSVVKQSNNTDREVLVEDEPENVIALAKKALSASKQVASLVDESELVGT----DLDSS
Query: SSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGK-DTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS
SSS SL ++ V+S + +RR+K RR PK E Y K ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L+S
Subjt: SSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGK-DTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS
Query: QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Q G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAK+YQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+I
Subjt: QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Query: FEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRH
F++SRTIRLPENVY LLGKV+EA+ V+ GN +PSKEELA HVG++ E+LDKLL+ +R P S+QQP+W+DQDTTFQEIT DS ++TP +SV ++LMR H
Subjt: FEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRH
Query: IRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLL
+RNLL++LSPKERRII+LRFGI+ GK+++L EIG ++GLSKERVRQLE+RALY+LK+ NS GL AYADLL
Subjt: IRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAYADLL
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| AT3G53920.1 RNApolymerase sigma-subunit C | 1.1e-35 | 24.88 | Show/hide |
Query: VVKQSNNTDREVLVEDEPENVIALAKKALS---ASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDT
V S +R+++++ L K LS S + L D +ELV T + S K ++ + + + + +P + T T+N
Subjt: VVKQSNNTDREVLVEDEPENVIALAKKALS---ASKQVASLVDESELVGTDLDSSSSSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDT
Query: RRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVH
R + + K+ + E+E+ ++ + ++ ++ +L+ + G+ +L WA A G+ + L LH R++L+ + +V+
Subjt: RRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVH
Query: IAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLK-PSKEELAAHVG
+A+ Y+G G++ DL+Q G +G+++ E+F G +F+TY +WIR+S+ + H+R + +P ++ + + +A+ + +K + EE+A G
Subjt: IAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNLK-PSKEELAAHVG
Query: ITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVR
+V+++ ++ S+ + V T F E T D+ +++P+ +V R+ RR I +LL L P+E++++ LR+G++D + K+L EIG + +SKE +R
Subjt: ITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVR
Query: QLENRALYKLKRCCNSQGLAAY
++E RA+ KL+ N++ L Y
Subjt: QLENRALYKLKRCCNSQGLAAY
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| AT5G13730.1 sigma factor 4 | 2.0e-42 | 32.88 | Show/hide |
Query: SSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQF
SS + E+ ++S K + RR ++RRV E N G + +T + + + G L+ EE +L + +++ L+N+ ++
Subjt: SSDSLSKEQRTVKSTKLQDRRSKKRRVPKHVTTIHETYNRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQF
Query: GREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFE
E V A G + L + +REK+ R+VV IA YQG+GL+L DL+QEGS+GL++ E+F P G + +TY YWWI+Q+I +AI
Subjt: GREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFE
Query: HSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIR
SR ++LP +++ L KV EA N R +PS EE+A H+ + V + + SR P SL + + T QEI + P+ V+RE M+ I
Subjt: HSRTIRLPENVYGLLGKVTEAKNYFVRAGNLKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIR
Query: NLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAY
LL L+ +E R++ L FG+ + EIG LS+ERVRQ+ AL KL+ N L Y
Subjt: NLLSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLAAY
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