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Spg012760 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012760
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box protein CPR30-like
Genome locationscaffold1:20546289..20546815
RNA-Seq ExpressionSpg012760
SyntenySpg012760
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR010613 - Pescadillo


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596950.1 F-box protein CPR1, partial [Cucurbita argyrosperma subsp. sororia]4.0e-1266.07Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENG-DGVLWVKLFTIGP
        ES E +D++YRS   LNG +VL HYPKSGDERMFDIWKME    GV W K+FTI P
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENG-DGVLWVKLFTIGP
XP_004147498.2 F-box protein CPR1-like [Cucumis sativus]3.7e-1059.65Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGD--GVLWVKLFTIGP
        ES E   D YRSL VL+GCIVL HYP  GDER FD+W+M   +  GV W K+ TIGP
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGD--GVLWVKLFTIGP
XP_022941026.1 F-box/kelch-repeat protein At3g17530-like [Cucurbita moschata]2.0e-1164.29Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENG-DGVLWVKLFTIGP
        ES E +D++YRS   LNG +VL HYPKSGDER FDIWKME    GV W K+FTI P
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENG-DGVLWVKLFTIGP
XP_022983805.1 F-box protein CPR1-like [Cucurbita maxima]1.7e-1058.06Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGD--GVLWVKLFTIGPTNEAE
        ES E E + YRS+ +LNG IVL HYP  GDER FDIW ME  +  GV W KL TIGP    E
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGD--GVLWVKLFTIGPTNEAE
XP_038906036.1 F-box protein CPR1-like [Benincasa hispida]4.4e-1159.68Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGD--GVLWVKLFTIGPTNEAE
        ES +   D YRSL VLNG IVL HYP  GDER FDIW+ME  +  GV W KL TIGP +  E
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGD--GVLWVKLFTIGPTNEAE
TrEMBL top hitse value%identityAlignment
A0A1S3B8N6 F-box protein CPR30-like3.1e-1054.84Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKM--ENGDGVLWVKLFTIGPTNEAE
        ES +   D YRSL VL+GCIVL HYP  GDER FD+W+M  +   GV W K+ TIGP +  E
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKM--ENGDGVLWVKLFTIGPTNEAE
A0A5D3DPN6 F-box protein CPR30-like2.4e-1054.84Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKM--ENGDGVLWVKLFTIGPTNEAE
        ES +   D YRSL VL+GCIVL HYP  GDER FD+W+M  +   GV W K+ TIGP +  E
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKM--ENGDGVLWVKLFTIGPTNEAE
A0A5D3DPY4 F-box protein CPR30-like3.1e-1054.84Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKM--ENGDGVLWVKLFTIGPTNEAE
        ES +   D YRSL VL+GCIVL HYP  GDER FD+W+M  +   GV W K+ TIGP +  E
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKM--ENGDGVLWVKLFTIGPTNEAE
A0A6J1FK05 F-box/kelch-repeat protein At3g17530-like9.6e-1264.29Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENG-DGVLWVKLFTIGP
        ES E +D++YRS   LNG +VL HYPKSGDER FDIWKME    GV W K+FTI P
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENG-DGVLWVKLFTIGP
A0A6J1J6Y5 F-box protein CPR1-like8.1e-1158.06Show/hide
Query:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGD--GVLWVKLFTIGPTNEAE
        ES E E + YRS+ +LNG IVL HYP  GDER FDIW ME  +  GV W KL TIGP    E
Subjt:  ESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGD--GVLWVKLFTIGPTNEAE
SwissProt top hitse value%identityAlignment
A8JBB2 Pescadillo homolog1.1e-0454.05Show/hide
Query:  EAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFY
        +AE+ GQ +TWLVPH+L Q L   V   V+L F+EFY
Subjt:  EAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFY
Q851S7 Pescadillo homolog8.1e-0865.79Show/hide
Query:  EAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFYE
        +AEV+GQKITWL PH+L Q LTD V   V+L F+EFYE
Subjt:  EAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFYE
Q9LYK7 Pescadillo homolog6.8e-0757.89Show/hide
Query:  EAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFYE
        +AE+EGQKITWL PH++ Q  T+ V   V+L F+EFYE
Subjt:  EAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFYE
Arabidopsis top hitse value%identityAlignment
AT5G14520.1 pescadillo-related4.9e-0857.89Show/hide
Query:  EAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFYE
        +AE+EGQKITWL PH++ Q  T+ V   V+L F+EFYE
Subjt:  EAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFYE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGTCTCGAGTGGGAGGATGATGAGTATAGAAGTTTGGAGGTTTTGAATGGATGCATTGTTCTCCTTCATTATCCGAAGAGTGGGGATGAAAGAATGTTTGACAT
TTGGAAGATGGAGAATGGTGATGGGGTTTTATGGGTAAAGCTATTCACAATTGGCCCTACAAATGAAGCTGAGGTAGAAGGTCAAAAGATTACATGGCTTGTCCCTCATT
CGCTGCATCAGACGTTGACTGATGGTGTTCACATACCTGTTATTCTTAACTTCATGGAATTTTATGAGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGTCTCGAGTGGGAGGATGATGAGTATAGAAGTTTGGAGGTTTTGAATGGATGCATTGTTCTCCTTCATTATCCGAAGAGTGGGGATGAAAGAATGTTTGACAT
TTGGAAGATGGAGAATGGTGATGGGGTTTTATGGGTAAAGCTATTCACAATTGGCCCTACAAATGAAGCTGAGGTAGAAGGTCAAAAGATTACATGGCTTGTCCCTCATT
CGCTGCATCAGACGTTGACTGATGGTGTTCACATACCTGTTATTCTTAACTTCATGGAATTTTATGAGTTTTAG
Protein sequenceShow/hide protein sequence
MESLEWEDDEYRSLEVLNGCIVLLHYPKSGDERMFDIWKMENGDGVLWVKLFTIGPTNEAEVEGQKITWLVPHSLHQTLTDGVHIPVILNFMEFYEF