; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg012761 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012761
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold1:21517177..21520376
RNA-Seq ExpressionSpg012761
SyntenySpg012761
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033937.1 hypothetical protein E6C27_scaffold43059G001310 [Cucumis melo var. makuwa]8.9e-2065.93Show/hide
Query:  MAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEED
        MA  KEENQC  ST+ R  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+HS  PSRMKRK SV INTEED
Subjt:  MAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEED

KAA0042866.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-2049.62Show/hide
Query:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDF-IPPNL
        +SMA  +EENQC  ST+ R SAF+RLS+STSKK R STS FDRLK+TND+ +R+M +L+ K F E N D K+HS  PSRMKRK SV INTE+   + P  
Subjt:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDF-IPPNL

Query:  MSRSPQVRCSTHAKFVA--PVPSSKFEGSDALL
        +  + + R S    ++A   + S   +G+ +LL
Subjt:  MSRSPQVRCSTHAKFVA--PVPSSKFEGSDALL

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]5.2e-2044.07Show/hide
Query:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTE---------
        +SMA  +EENQC  ST+TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E N D K+HS  PSRMKRK SV INTE         
Subjt:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTE---------

Query:  ----EDFIPPNL-MSRSPQV-RCSTHAKFVAPVPSSKFEGSDALLCSSFSPSSKVLMHFAAVPPLQVRGCLRCTLLR
            + F PPN  +S SP+V +  +    V  +P    + + A+       S K     A +PP + R   R  L R
Subjt:  ----EDFIPPNL-MSRSPQV-RCSTHAKFVAPVPSSKFEGSDALLCSSFSPSSKVLMHFAAVPPLQVRGCLRCTLLR

KAA0066111.1 hypothetical protein E6C27_scaffold21G001050 [Cucumis melo var. makuwa]4.0e-2065.93Show/hide
Query:  MAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEED
        M  +KEENQC  ST+TR SAF+RLS+STSKK RS TS FDRLK+TNDQ +R+M  L+ K F E N D K+HS  PSRMK K SV INTEED
Subjt:  MAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEED

TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]6.8e-2062.11Show/hide
Query:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDFI
        +SMA  +EENQC  ST+TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E N D K+HS  PSRMKRK SV INTE   I
Subjt:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDFI

TrEMBL top hitse value%identityAlignment
A0A5A7SXD7 Uncharacterized protein4.3e-2065.93Show/hide
Query:  MAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEED
        MA  KEENQC  ST+ R  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+HS  PSRMKRK SV INTEED
Subjt:  MAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEED

A0A5A7TLK0 Retrotransposon gag protein5.1e-2149.62Show/hide
Query:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDF-IPPNL
        +SMA  +EENQC  ST+ R SAF+RLS+STSKK R STS FDRLK+TND+ +R+M +L+ K F E N D K+HS  PSRMKRK SV INTE+   + P  
Subjt:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDF-IPPNL

Query:  MSRSPQVRCSTHAKFVA--PVPSSKFEGSDALL
        +  + + R S    ++A   + S   +G+ +LL
Subjt:  MSRSPQVRCSTHAKFVA--PVPSSKFEGSDALL

A0A5A7VHY3 Uncharacterized protein2.5e-2044.07Show/hide
Query:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTE---------
        +SMA  +EENQC  ST+TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E N D K+HS  PSRMKRK SV INTE         
Subjt:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTE---------

Query:  ----EDFIPPNL-MSRSPQV-RCSTHAKFVAPVPSSKFEGSDALLCSSFSPSSKVLMHFAAVPPLQVRGCLRCTLLR
            + F PPN  +S SP+V +  +    V  +P    + + A+       S K     A +PP + R   R  L R
Subjt:  ----EDFIPPNL-MSRSPQV-RCSTHAKFVAPVPSSKFEGSDALLCSSFSPSSKVLMHFAAVPPLQVRGCLRCTLLR

A0A5A7VK69 Uncharacterized protein1.9e-2065.93Show/hide
Query:  MAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEED
        M  +KEENQC  ST+TR SAF+RLS+STSKK RS TS FDRLK+TNDQ +R+M  L+ K F E N D K+HS  PSRMK K SV INTEED
Subjt:  MAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEED

A0A5D3E2D7 Gag protease polyprotein3.3e-2062.11Show/hide
Query:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDFI
        +SMA  +EENQC  ST+TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E N D K+HS  PSRMKRK SV INTE   I
Subjt:  MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTAAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATA
GTAGCTTCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACT
CACGCTAAGTTCGTTGCTCCAGTTCCTTCCTCCAAGTTCGAAGGTTCTGATGCGCTTCTCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCACTTCGCAGCAGT
TCCTCCTCTCCAAGTTCGAGGGTGCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCCGATGCACGCTCCTGCGTTGCTCCTTCTCAAAGTTC
GAAGGTTCTCGGCTTGCATTGTTGCGCTACTTCCTTCTTCAAGTTCGAAGGTTCTCACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCG
CTGCTTCCTTCACTAAGTTCGAAAGTTCTGACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGT
TCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTCCTCATGCGCTACGCTACAGTTCCTTCTCCAAGTTCGAAGGTTTTCACCTCCAGTTCCTTCCTCC
AAGTTCGAAGGTTCTCATGCGCTCCGCTGCAGTTCCTTCTGTCCAAGTTTGAAGGTTCTCATGCACTTCGCAGTAGTTCCTTCTCTCCAAGTTCGAGGGTGCTTACGTTG
TACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCGGCTTGCATTGTTGCGCTACTTCCTTCTTCAAGTTCGAAGGTTCTCACGTTGCGCTATTGTGCTCCTTC
CTTTTCCAAGTTCGAAGGTTCTTACGTTGCGCTGCTTCCTTCACTAAGTTCGAAAGTTCTGACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTCATG
CTGCGCTGCTTTCTTCACCATGTTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTCCCCATGCGCTACACTACTGTTCCTTCTCCAAGT
TCGAAGGTTTTCACGTGTTCTCATGTTGTTACGCTACAGCTCCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTCCACTGCATTTCCTTCTCTCCAAGTTCGAAG
GTTCTCATGCACTTCGCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTAAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATA
GTAGCTTCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACT
CACGCTAAGTTCGTTGCTCCAGTTCCTTCCTCCAAGTTCGAAGGTTCTGATGCGCTTCTCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCACTTCGCAGCAGT
TCCTCCTCTCCAAGTTCGAGGGTGCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCCGATGCACGCTCCTGCGTTGCTCCTTCTCAAAGTTC
GAAGGTTCTCGGCTTGCATTGTTGCGCTACTTCCTTCTTCAAGTTCGAAGGTTCTCACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCG
CTGCTTCCTTCACTAAGTTCGAAAGTTCTGACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGT
TCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTCCTCATGCGCTACGCTACAGTTCCTTCTCCAAGTTCGAAGGTTTTCACCTCCAGTTCCTTCCTCC
AAGTTCGAAGGTTCTCATGCGCTCCGCTGCAGTTCCTTCTGTCCAAGTTTGAAGGTTCTCATGCACTTCGCAGTAGTTCCTTCTCTCCAAGTTCGAGGGTGCTTACGTTG
TACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCGGCTTGCATTGTTGCGCTACTTCCTTCTTCAAGTTCGAAGGTTCTCACGTTGCGCTATTGTGCTCCTTC
CTTTTCCAAGTTCGAAGGTTCTTACGTTGCGCTGCTTCCTTCACTAAGTTCGAAAGTTCTGACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTCATG
CTGCGCTGCTTTCTTCACCATGTTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTCCCCATGCGCTACACTACTGTTCCTTCTCCAAGT
TCGAAGGTTTTCACGTGTTCTCATGTTGTTACGCTACAGCTCCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTCCACTGCATTTCCTTCTCTCCAAGTTCGAAG
GTTCTCATGCACTTCGCAGTAG
Protein sequenceShow/hide protein sequence
MSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMDNLEVKLFDEVNSDKKLHSSFPSRMKRKFSVLINTEEDFIPPNLMSRSPQVRCST
HAKFVAPVPSSKFEGSDALLCSSFSPSSKVLMHFAAVPPLQVRGCLRCTLLRCSFSKFEGSPMHAPALLLLKVRRFSACIVALLPSSSSKVLTLRYCAPSFSKFEGSDVA
LLPSLSSKVLTLRYCAPSFSKFEGSHVALLPSPSSKVLTLRCFAVPSPSSKVLMRYATVPSPSSKVFTSSSFLQVRRFSCAPLQFLLSKFEGSHALRSSSFSPSSRVLTL
YAAALFLLQVRRFSACIVALLPSSSSKVLTLRYCAPSFSKFEGSYVALLPSLSSKVLTLRYCAPSFSKFEGSHAALLSSPCSKVLTLRCFAVPSPSSKVPMRYTTVPSPS
SKVFTCSHVVTLQLQFLPPSSKVLMRSTAFPSLQVRRFSCTSQ