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Spg012762 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012762
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionnuclear pore complex protein NUP62
Genome locationscaffold1:18332759..18340446
RNA-Seq ExpressionSpg012762
SyntenySpg012762
Gene Ontology termsGO:0006405 - RNA export from nucleus (biological process)
GO:0006606 - protein import into nucleus (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
GO:0005543 - phospholipid binding (molecular function)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsIPR026010 - Nucleoporin NSP1/NUP62


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047772.1 nuclear pore complex protein NUP62 [Cucumis melo var. makuwa]5.2e-4297.87Show/hide
Query:  RYEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        +YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAAT+GPAADRELLGQKFWMS
Subjt:  RYEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

XP_008459731.1 PREDICTED: nuclear pore complex protein NUP62 [Cucumis melo]6.7e-4298.92Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAAT+GPAADRELLGQKFWMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

XP_022142426.1 nuclear pore complex protein NUP62-like isoform X1 [Momordica charantia]5.2e-4298.92Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK+AATQGPAADRELLGQKFWMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

XP_022142427.1 nuclear pore complex protein NUP62-like isoform X2 [Momordica charantia]5.2e-4298.92Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK+AATQGPAADRELLGQKFWMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

XP_022156652.1 nuclear pore complex protein NUP62, partial [Momordica charantia]5.2e-4298.92Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK+AATQGPAADRELLGQKFWMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

TrEMBL top hitse value%identityAlignment
A0A5A7TWA6 Nuclear pore complex protein NUP622.5e-4297.87Show/hide
Query:  RYEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        +YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAAT+GPAADRELLGQKFWMS
Subjt:  RYEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

A0A5D3DMB1 Nuclear pore complex protein NUP623.3e-4298.92Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAAT+GPAADRELLGQKFWMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

A0A6J1CM51 nuclear pore complex protein NUP62-like isoform X12.5e-4298.92Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK+AATQGPAADRELLGQKFWMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

A0A6J1CMQ9 nuclear pore complex protein NUP62-like isoform X22.5e-4298.92Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK+AATQGPAADRELLGQKFWMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

A0A6J1DSI7 nuclear pore complex protein NUP622.5e-4298.92Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK+AATQGPAADRELLGQKFWMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

SwissProt top hitse value%identityAlignment
P17955 Nuclear pore glycoprotein p622.6e-0434.72Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK
        Y+ AE I+ +L++M + +K II+ LN   GG  D  D   PL  + +ILN  + SL W+D+ +     R+++
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK

P37198 Nuclear pore glycoprotein p627.6e-0432.88Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKL
        Y+ AE I+ +L++M + +K II+ LN + G   D  D   PL  + +ILN  + SL WID+ +     +++++
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKL

Q63850 Nuclear pore glycoprotein p622.6e-0434.72Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK
        Y+ AE I+ +L++M + +K II+ LN   GG  D  D   PL  + +ILN  + SL W+D+ +     R+++
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQK

Q7JXF5 Nuclear pore glycoprotein p627.6e-0429.87Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQ
        Y   E ++ +L+QM+E +K II  LN    G+    D   P+  + +ILN  ++SL WI+ ++   S +++ +   Q
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQ

Q8L7F7 Nuclear pore complex protein NUP624.5e-3377.42Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQ+E +ERELE MTEQI+SIIQ++NANQGGEL+ IDGM+PLD VVRILNNQLSSLMWIDEKAEEFSSRIQK+ A QG   DREL+  K WMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS

Arabidopsis top hitse value%identityAlignment
AT2G45000.1 structural constituent of nuclear pore3.2e-3477.42Show/hide
Query:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS
        YEQ+E +ERELE MTEQI+SIIQ++NANQGGEL+ IDGM+PLD VVRILNNQLSSLMWIDEKAEEFSSRIQK+ A QG   DREL+  K WMS
Subjt:  YEQAEYIERELEQMTEQIKSIIQTLNANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGGAAGACCTCGACCATATTTTGTGGAGGTGTAGTTTTGCTAGGGCTGTGTGGGACATGTTTTTTGTCTCGTTTGGTTTGCAGTTTGCTAGGCACAGGGGCCT
TAGAGAGATGATCGAGGAGTTCCTCCCCCATCCCCCTTTTCGTATAACAGATTTGAGACTTTGTTACGAGTCCCTTTTTGCAAAGTTATGGCGGTTTTCTCTGGAAGTCA
AAGCTTTATTGCATAGGATCATGGTTAACAGGTATGAGCAAGCTGAGTATATAGAGCGGGAACTTGAGCAGATGACAGAACAGATCAAATCAATTATCCAGACCCTAAAT
GCAAACCAGGGAGGAGAACTTGATGTGATTGATGGGATGACACCGTTAGATGCAGTTGTTCGAATTTTGAACAATCAATTAAGTTCATTAATGTGGATCGATGAAAAGGC
CGAAGAGTTTTCTTCACGTATTCAGAAGCTTGCTGCTACCCAAGGTCCTGCTGCAGATCGTGAATTGTTGGGTCAGAAGTTCTGGATGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGGAAGACCTCGACCATATTTTGTGGAGGTGTAGTTTTGCTAGGGCTGTGTGGGACATGTTTTTTGTCTCGTTTGGTTTGCAGTTTGCTAGGCACAGGGGCCT
TAGAGAGATGATCGAGGAGTTCCTCCCCCATCCCCCTTTTCGTATAACAGATTTGAGACTTTGTTACGAGTCCCTTTTTGCAAAGTTATGGCGGTTTTCTCTGGAAGTCA
AAGCTTTATTGCATAGGATCATGGTTAACAGGTATGAGCAAGCTGAGTATATAGAGCGGGAACTTGAGCAGATGACAGAACAGATCAAATCAATTATCCAGACCCTAAAT
GCAAACCAGGGAGGAGAACTTGATGTGATTGATGGGATGACACCGTTAGATGCAGTTGTTCGAATTTTGAACAATCAATTAAGTTCATTAATGTGGATCGATGAAAAGGC
CGAAGAGTTTTCTTCACGTATTCAGAAGCTTGCTGCTACCCAAGGTCCTGCTGCAGATCGTGAATTGTTGGGTCAGAAGTTCTGGATGTCTTAA
Protein sequenceShow/hide protein sequence
MAEEDLDHILWRCSFARAVWDMFFVSFGLQFARHRGLREMIEEFLPHPPFRITDLRLCYESLFAKLWRFSLEVKALLHRIMVNRYEQAEYIERELEQMTEQIKSIIQTLN
ANQGGELDVIDGMTPLDAVVRILNNQLSSLMWIDEKAEEFSSRIQKLAATQGPAADRELLGQKFWMS