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Spg012928 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg012928
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionnuclear pore complex protein NUP62
Genome locationscaffold1:18343260..18345901
RNA-Seq ExpressionSpg012928
SyntenySpg012928
Gene Ontology termsGO:0006405 - RNA export from nucleus (biological process)
GO:0006606 - protein import into nucleus (biological process)
GO:0010930 - negative regulation of auxin mediated signaling pathway (biological process)
GO:0034399 - nuclear periphery (cellular component)
GO:0044613 - nuclear pore central transport channel (cellular component)
GO:0005543 - phospholipid binding (molecular function)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsIPR007758 - Nucleoporin, NSP1-like, C-terminal
IPR026010 - Nucleoporin NSP1/NUP62


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575234.1 Nuclear pore complex protein NUP62, partial [Cucurbita argyrosperma subsp. sororia]5.1e-4496.12Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQ ELE+KLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

XP_022156652.1 nuclear pore complex protein NUP62, partial [Momordica charantia]5.1e-4497.09Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKAL SVEEDAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

XP_022959228.1 nuclear pore complex protein NUP62 isoform X1 [Cucurbita moschata]5.1e-4496.12Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQ ELE+KLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

XP_023006514.1 nuclear pore complex protein NUP62 [Cucurbita maxima]5.1e-4496.12Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQ ELE+KLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

XP_023548092.1 nuclear pore complex protein NUP62 [Cucurbita pepo subsp. pepo]5.1e-4496.12Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQ ELE+KLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

TrEMBL top hitse value%identityAlignment
A0A1S3CAD4 nuclear pore complex protein NUP622.1e-4394.17Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRI+QNRDILLRLEIEVAKVVETQAELE+KLELIETHQQEVDKAL SVE+DAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

A0A5D3DMB1 Nuclear pore complex protein NUP622.1e-4394.17Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRI+QNRDILLRLEIEVAKVVETQAELE+KLELIETHQQEVDKAL SVE+DAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

A0A6J1DSI7 nuclear pore complex protein NUP622.5e-4497.09Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKAL SVEEDAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

A0A6J1H5C8 nuclear pore complex protein NUP62 isoform X12.5e-4496.12Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQ ELE+KLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

A0A6J1L2D4 nuclear pore complex protein NUP622.5e-4496.12Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQ ELE+KLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
        A++
Subjt:  AIF

SwissProt top hitse value%identityAlignment
P17955 Nuclear pore glycoprotein p624.9e-0528.16Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        +I +W+ EL+++   F +QA  +  WDR +++N + +  L  EV KV   Q  L+++L+ I + Q+E++  L  +EE      K++ G +    A   R+
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
          +
Subjt:  AIF

P37198 Nuclear pore glycoprotein p622.8e-0528.16Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        +I +W+ EL+++   F +QA  +  WDR +++N + +  L  EV KV   Q  L+++L+ I + Q+E++  L  +EE    + K++ G +    A   R+
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
          +
Subjt:  AIF

Q63850 Nuclear pore glycoprotein p624.9e-0528.16Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        +I +W+ EL+++   F +QA  +  WDR +++N + +  L  EV KV   Q  L+++L+ I + Q+E++  L  +EE      K++ G +    A   R+
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIF
          +
Subjt:  AIF

Q8L7F7 Nuclear pore complex protein NUP623.8e-4278.81Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWN ELQERTG+FRKQANAIAEWD+RILQNRD+LLRLEIEVAKVVETQ+ LER+LELIETHQQEVDKALQS+EE+AERIY DER  LLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIFGIGTGALFARRLLHL
        A++      L  R L H+
Subjt:  AIFGIGTGALFARRLLHL

Q9H1M0 Nucleoporin-62 C-terminal-like protein2.2e-0533.94Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEA-----
        +I EWN EL+++   F  QA  +  WD  +++N +++  L  EV KV   Q  LE++L+ I + QQE++  L  +EE      +D+ GL    +A     
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEA-----

Query:  -ASTRDAIF
          STR A F
Subjt:  -ASTRDAIF

Arabidopsis top hitse value%identityAlignment
AT2G45000.1 structural constituent of nuclear pore2.7e-4378.81Show/hide
Query:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD
        IIKEWN ELQERTG+FRKQANAIAEWD+RILQNRD+LLRLEIEVAKVVETQ+ LER+LELIETHQQEVDKALQS+EE+AERIY DER  LLDDEAASTRD
Subjt:  IIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTRD

Query:  AIFGIGTGALFARRLLHL
        A++      L  R L H+
Subjt:  AIFGIGTGALFARRLLHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCGACCGATTGACTGATGATCGGTTGATCATCAAGGAGTGGAATGCAGAGCTTCAAGAGCGTACTGGAAAATTTCGGAAGCAGGCCAATGCTATTGCTGAGTG
GGATAGGAGAATTTTGCAAAATCGTGATATCCTCCTTAGACTTGAGATTGAAGTTGCAAAGGTGGTTGAGACCCAAGCTGAGCTAGAGAGGAAATTGGAGCTGATTGAAA
CTCACCAACAAGAGGTTGATAAGGCTTTGCAAAGTGTGGAAGAAGATGCTGAGCGCATTTACAAGGATGAACGTGGTTTACTTCTTGACGATGAGGCTGCATCTACAAGG
GATGCAATTTTTGGAATTGGCACTGGGGCATTATTTGCAAGGAGGCTTTTGCATTTAGCAATGAAAGACCAAAAGCACCCAACATTGGCCTCAGAAGTTCCTCCTCTTAG
CATGTCTAGTGGGTTGACCAAATCTGACCAGACAGACTTGAGATATTCCGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATCGACCGATTGACTGATGATCGGTTGATCATCAAGGAGTGGAATGCAGAGCTTCAAGAGCGTACTGGAAAATTTCGGAAGCAGGCCAATGCTATTGCTGAGTG
GGATAGGAGAATTTTGCAAAATCGTGATATCCTCCTTAGACTTGAGATTGAAGTTGCAAAGGTGGTTGAGACCCAAGCTGAGCTAGAGAGGAAATTGGAGCTGATTGAAA
CTCACCAACAAGAGGTTGATAAGGCTTTGCAAAGTGTGGAAGAAGATGCTGAGCGCATTTACAAGGATGAACGTGGTTTACTTCTTGACGATGAGGCTGCATCTACAAGG
GATGCAATTTTTGGAATTGGCACTGGGGCATTATTTGCAAGGAGGCTTTTGCATTTAGCAATGAAAGACCAAAAGCACCCAACATTGGCCTCAGAAGTTCCTCCTCTTAG
CATGTCTAGTGGGTTGACCAAATCTGACCAGACAGACTTGAGATATTCCGGCTAA
Protein sequenceShow/hide protein sequence
MEIDRLTDDRLIIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDILLRLEIEVAKVVETQAELERKLELIETHQQEVDKALQSVEEDAERIYKDERGLLLDDEAASTR
DAIFGIGTGALFARRLLHLAMKDQKHPTLASEVPPLSMSSGLTKSDQTDLRYSG