CuGenDBv2

Gene ID	Spg012976
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Translation initiation factor IF-2, putative isoform 1
Genome location	scaffold1:6451589..6454731
RNA-Seq Expression	Spg012976
Synteny	Spg012976
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594850.1 hypothetical protein SDJN03_11403, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-109

90.04

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSIL-RGEQ
        MARRKAKKTVK SSPSP EKAKDEAEN+LK+EEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFF+E LPNLSI  +GE 
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSIL-RGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLE-EPSDSMMLGMPDILQTPGVSNQRLS
        GEIEVQWK+TE EL  N  DG+D+HASLLHRLSIAYPN SAGMRSLNGFEFSSKSVKTNPFNVE+LQIPSLVLE EPSDSMMLGM DILQTPGVSNQRLS
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLE-EPSDSMMLGMPDILQTPGVSNQRLS

Query:  IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        IGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHES+E
Subjt:  IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

KAG6604007.1 hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-109

87.97

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ
        MARRKAKK+VKKSSPSP  +AKD + N+LK+E+QA LVSDEDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEE LP+LSI  RGEQ
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI
        GEIEVQWKDTE ELH N ADGIDIHASLLHRLS AYPNCSAGMRS NGFEFSSKSVKTNPFNVENLQIP+  LEEPSD+M+LGMPD+LQTPGVSNQRLSI
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

KAG7034170.1 hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-107

86.18

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ
        MARRKAKK+VKKSSPSP  +AKD + N+LK+E+QA LVSDEDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEE LP+LSI  RGEQ
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPG-----VSN
        GEIEVQWKDTE ELH N ADGIDIHASLLHRLS AYPNCSAGMRS NGFEFSSKSVKTNPFNVENLQIP+  LEEPSD+M+LGMPD+LQTPG     VSN
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPG-----VSN

Query:  QRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        QRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIHESEEG
Subjt:  QRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_022133198.1 uncharacterized protein LOC111005854 [Momordica charantia]

2.8e-107

88.8

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ
        MARRKAKKT KK SPSP      EAEN+ K EEQAPLVS+EDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEE LPNLSI   GEQ
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI
        GEIEVQWKD  GELH   ADGIDIHASLLHRLSIAYPNCSAGM+S+NGFEFSSKSVKTN FNVENLQIPS VLEEPSDSMMLGMPDILQTPGV NQRLSI
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

XP_023543921.1 uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]

5.6e-108

87.14

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ
        MARRKAKK+VKKSSPSP  +AKD + N+LK+E+QA LVSDEDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEE LP+LSI  RGEQ
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI
        GEIEVQWK+TE ELH N ADGIDIHASLLHRLS AYPNCSAGMRS NGFEFSSKSVKTNPFNVENLQIP+  LEEPSD+M+LGMPD+LQTPGVSNQRLSI
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGE+LVSIHGSPLGVY+E+NMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DWB9 uncharacterized protein LOC103489436

2.5e-106

86.72

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ
        MARRKAKKTVKKSSPS G  AKDEA +K+K        SDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEE LP+LSI +RG+Q
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI
        GEIEVQWKDTE ELH N ADG+DIHASLLHRLS AYP CSAGMRS NGFEFSSKSVKTNPFN ENLQIP+ VLEEPSD+M+LGMPDILQTPG+SNQRLSI
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A6J1BYE7 uncharacterized protein LOC111005854

1.3e-107

88.8

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ
        MARRKAKKT KK SPSP      EAEN+ K EEQAPLVS+EDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFFEE LPNLSI   GEQ
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI
        GEIEVQWKD  GELH   ADGIDIHASLLHRLSIAYPNCSAGM+S+NGFEFSSKSVKTN FNVENLQIPS VLEEPSDSMMLGMPDILQTPGV NQRLSI
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
        GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

A0A6J1HHY4 uncharacterized protein LOC111463139

4.8e-105

88.38

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSIL-RGEQ
        MARRKAKKTVKKSSP   EK KDEAEN+LK+EEQ PLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFF+E LPNLSI  +GE 
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSIL-RGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLE-EPSDSMMLGMPDILQTPGVSNQRLS
        GEIEVQWK+TE EL  N  DG+D+HASLL RLSIAYPN SAGMRSLNGFEFSSKSVKTNPFNVE+LQIPSLVLE EPSDSMMLGM DILQTPGVSNQRLS
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLE-EPSDSMMLGMPDILQTPGVSNQRLS

Query:  IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        IGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHES+E
Subjt:  IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

A0A6J1ILD3 uncharacterized protein LOC111478496

3.3e-106

86.25

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ
        MARRKAKK+VKKSSPSP  +AKD + N+LK+E+QA LVSDEDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFF E LP+LSI  RGEQ
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSI-LRGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI
        GEIEVQWKDTE ELH N ADGIDIHASLLHRLS AYPNCSAG+RS NGFEFSSKSVKTNPFNVENLQIP+ VLEEPSD+M+LGMPD+LQTPG SNQRLSI
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        GMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIHESEE
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

A0A6J1KR76 uncharacterized protein LOC111496903

1.1e-104

87.97

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSIL-RGEQ
        MARRKAKK VKKSSP   EK KDEAEN+LK+EEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFF+E LPNLSI  + E 
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSIL-RGEQ

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLE-EPSDSMMLGMPDILQTPGVSNQRLS
        GEIEVQWK+TE EL  N  DG+D+HASLLHRLSIAYPN SAGMRSLNGFEFSSKSVKTNPFNVE+LQIPSLVLE EPSDSMMLGM DILQTPG SNQRLS
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLE-EPSDSMMLGMPDILQTPGVSNQRLS

Query:  IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE
        IGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHES+E
Subjt:  IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G39630.1 unknown protein

2.7e-52

50.42

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Query:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSILRGEQ-
        M +RKAK+ VK +     +      E +++ EE+     DE+VER  AAIRAIRDVEIE+++T LRLLRSYF +EQL TP+L FF+ENLP+LSI R E+ 
Subjt:  MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSILRGEQ-

Query:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI
        GEIE++W+D  G+      +G+D++ S+L RLS+ + +  +   SL G++    +VK N    +N Q+ +LV +  S++ ML   D  QTPGV+ QRLS 
Subjt:  GEIEVQWKDTEGELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSI

Query:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE
        GMTPKT RLPK GEM++S+HGSPLGVYKED NM AI+E
Subjt:  GMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE

Sequences

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CDS sequence

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ATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAAGTCAAGCCCTTCACCTGGGGAAAAAGCGAAGGATGAAGCAGAAAATAAGTTAAAAAATGAGGAGCAAGCACCTTT
GGTGTCCGACGAGGATGTTGAACGGCATGCTGCTGCAATTCGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAACTGCGGTTGCTTCGTTCGTATTTCAACA
AAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAGGAAAATCTTCCAAACTTGTCCATTTTGAGAGGTGAACAGGGAGAAATTGAAGTACAATGGAAGGATACAGAG
GGTGAATTACACAACAATCTAGCTGATGGAATAGATATACATGCTTCTCTGCTGCATCGCCTGTCCATAGCTTATCCTAACTGCTCTGCCGGAATGCGATCTTTAAATGG
ATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATTCCGAGTTTAGTTTTGGAGGAGCCCTCAGATAGTATGATGCTCGGAATGC
CAGACATTCTTCAAACTCCTGGGGTAAGTAACCAAAGATTGTCAATTGGGATGACACCGAAAACCCGACGGCTGCCGAAGCCCGGCGAGATGCTTGTGTCTATCCACGGA
TCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATACATGAATCAGAAGAGGGTTGA

mRNA sequence

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Protein sequence

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MARRKAKKTVKKSSPSPGEKAKDEAENKLKNEEQAPLVSDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEENLPNLSILRGEQGEIEVQWKDTE
GELHNNLADGIDIHASLLHRLSIAYPNCSAGMRSLNGFEFSSKSVKTNPFNVENLQIPSLVLEEPSDSMMLGMPDILQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHG
SPLGVYKEDNMEAIHESEEG

Spg012976 (gene) of Sponge gourd (cylindrica) v1 genome