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Spg013020 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013020
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-binding protein S1FA
Genome locationscaffold1:13418144..13419781
RNA-Seq ExpressionSpg013020
SyntenySpg013020
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8396621.1 hypothetical protein HHK36_018245 [Tetracentron sinense]1.2e-2555.47Show/hide
Query:  TISSSVTKSHRPSIAWDRLSECPYKLHLVNE---CSVSS--------SIHTSFVHVISSKIGLGAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNY
        +I+   T  H PS+   +L       HL  +   CS SS        +   +F   I  ++GL  QGN ++DA+ +GFNPGLIVLLV+GGLLL FLVGNY
Subjt:  TISSSVTKSHRPSIAWDRLSECPYKLHLVNE---CSVSS--------SIHTSFVHVISSKIGLGAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNY

Query:  ALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
         LYMYAQKTLPP+KKKPVSKKKMK+ERLKQG+SAPGE
Subjt:  ALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_004143239.1 DNA-binding protein S1FA [Cucumis sativus]5.6e-2692.96Show/hide
Query:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GN IRD +ARGFNPGLIVLLVVGGLL AFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_021647305.1 DNA-binding protein S1FA-like isoform X1 [Hevea brasiliensis]1.2e-2570.21Show/hide
Query:  SVSSSIHTSFVHVISSKIGLGAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        S+ + IH+   H+ + ++ LG + N ++D +ARGFNPGLIVLLVVGGL+LAFL+GNYALYMYAQKTLPPKKKKP+SKKKMK+ERLKQG+SAPGE
Subjt:  SVSSSIHTSFVHVISSKIGLGAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_022962636.1 DNA-binding protein S1FA-like [Cucurbita moschata]9.5e-2692.96Show/hide
Query:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GN IR+ADARGFNPGLIVLLVVGGLLLAFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_038881351.1 DNA-binding protein S1FA-like [Benincasa hispida]5.0e-2797.18Show/hide
Query:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GN IRDADARGFNPGLIVLLVVGGLLLAFL GNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

TrEMBL top hitse value%identityAlignment
A0A067DZ38 Uncharacterized protein1.0e-2569.47Show/hide
Query:  CSVSSSIHTSFVHVISSKIGLGAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        C++ S ++   V   + K     QGN ++DA A+GFNPGLIVLLVVGGLLL FL+GNY LYMYAQKTLPPKKKKPVSKKKMK+ERLKQG+SAPGE
Subjt:  CSVSSSIHTSFVHVISSKIGLGAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A0A0KEM3 DNA-binding protein S1FA2.7e-2692.96Show/hide
Query:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GN IRD +ARGFNPGLIVLLVVGGLL AFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A5A7TZ88 DNA-binding protein S1FA-like1.0e-2592.86Show/hide
Query:  NGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        N IRD +ARGFNPGLIVLLVVGGLL AFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  NGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A6J1CPM9 DNA-binding protein S1FA-like1.0e-2592.96Show/hide
Query:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G  IRDADA GFNPGL+VLLVVGGLLLAFLVGNYALY+YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A6J1HDT2 DNA-binding protein S1FA-like4.6e-2692.96Show/hide
Query:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GN IR+ADARGFNPGLIVLLVVGGLLLAFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  GNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA12.8e-2075.38Show/hide
Query:  ADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        A+A+G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

P42552 DNA-binding protein S1FA3.0e-2275Show/hide
Query:  IRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        + + +A+G NPGLIVLLV+GGLLL FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLKQG++ PGE
Subjt:  IRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

P42553 DNA-binding protein S1FA13.6e-2080.65Show/hide
Query:  RGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +G NPG IVLLVV  LL+ F VGNYALYMYAQKTLPP+KKKPVSKKK+KRE+LKQG+SAPGE
Subjt:  RGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q42337 DNA-binding protein S1FA23.6e-2064.86Show/hide
Query:  GAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G+ G  +   +A+G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQG+  PGE
Subjt:  GAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q93VI0 DNA-binding protein S1FA34.7e-2073.44Show/hide
Query:  DARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +++G NPGLIVLLV+GGLLL FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQG+  PGE
Subjt:  DARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein2.6e-2164.86Show/hide
Query:  GAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G+ G  +   +A+G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQG+  PGE
Subjt:  GAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G09735.1 S1FA-like DNA-binding protein3.4e-2173.44Show/hide
Query:  DARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +++G NPGLIVLLV+GGLLL FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQG+  PGE
Subjt:  DARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G53370.1 S1FA-like DNA-binding protein2.0e-2175.38Show/hide
Query:  ADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        A+A+G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G53370.2 S1FA-like DNA-binding protein8.0e-0772.73Show/hide
Query:  YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +A K LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAACTTCAAATTAAAATACGGCGTCGTTTCAAACCCCGTGGGCGGAACTGGCCTAAATCCCACAATCCGCCATTTTCATATCTCCGTTCCTTTTGTATTTTATCT
CGAAGCTTCTGCGGTTCATCTTTGTAGTACAGTAGCTCGTTGCGAAGGCCATCTCTCCGCTTCTGAATTTCAGCCATGGAAGACGATTTCGAGTTCGGTGACAAAGTCCC
ACCGGCCGTCAATCGCATGGGATCGTCTCTCCGAGTGCCCTTATAAACTGCATTTGGTAAATGAATGTTCCGTTTCTTCTTCTATACACACCTCGTTCGTTCATGTGATC
AGCAGTAAAATTGGCCTTGGTGCACAGGGAAACGGGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTTCTTGTAGTCGGTGGACTGCTCTTGGC
TTTTCTTGTTGGGAATTACGCTCTGTACATGTATGCGCAGAAGACCCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAG
GTATCTCTGCACCTGGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAAACTTCAAATTAAAATACGGCGTCGTTTCAAACCCCGTGGGCGGAACTGGCCTAAATCCCACAATCCGCCATTTTCATATCTCCGTTCCTTTTGTATTTTATCT
CGAAGCTTCTGCGGTTCATCTTTGTAGTACAGTAGCTCGTTGCGAAGGCCATCTCTCCGCTTCTGAATTTCAGCCATGGAAGACGATTTCGAGTTCGGTGACAAAGTCCC
ACCGGCCGTCAATCGCATGGGATCGTCTCTCCGAGTGCCCTTATAAACTGCATTTGGTAAATGAATGTTCCGTTTCTTCTTCTATACACACCTCGTTCGTTCATGTGATC
AGCAGTAAAATTGGCCTTGGTGCACAGGGAAACGGGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTTCTTGTAGTCGGTGGACTGCTCTTGGC
TTTTCTTGTTGGGAATTACGCTCTGTACATGTATGCGCAGAAGACCCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAG
GTATCTCTGCACCTGGAGAGTAG
Protein sequenceShow/hide protein sequence
MPNFKLKYGVVSNPVGGTGLNPTIRHFHISVPFVFYLEASAVHLCSTVARCEGHLSASEFQPWKTISSSVTKSHRPSIAWDRLSECPYKLHLVNECSVSSSIHTSFVHVI
SSKIGLGAQGNGIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE