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Spg013072 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013072
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUbiquitin-conjugating enzyme E2 28
Genome locationscaffold1:16647337..16649667
RNA-Seq ExpressionSpg013072
SyntenySpg013072
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0061631 - ubiquitin conjugating enzyme activity (molecular function)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like
IPR023313 - Ubiquitin-conjugating enzyme, active site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4100895.1 unnamed protein product [Lactuca saligna]1.6e-4268.12Show/hide
Query:  MCVDHGVEAYLEGTQGFTEGSAHILQRWI-------------GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSN
        + V  G EA LE TQG +E S+++LQR I              PVAEDMFHWQATIMGP DSPY+GGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSN
Subjt:  MCVDHGVEAYLEGTQGFTEGSAHILQRWI-------------GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSN

Query:  GSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

KAF8379655.1 hypothetical protein HHK36_029099 [Tetracentron sinense]2.4e-4364.19Show/hide
Query:  GVEAYLEGTQGFTEGSAHILQRWI----------------------------GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRT
        G +A LE TQG  +GS++ILQRW+                            GPVAEDMFHWQATIMGPSDSPY+GGVFLV IHFPPDYPFKPPKVAFRT
Subjt:  GVEAYLEGTQGFTEGSAHILQRWI----------------------------GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRT

Query:  KVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        KVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  KVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

KAF8402461.1 hypothetical protein HHK36_010545 [Tetracentron sinense]2.3e-4674.6Show/hide
Query:  HGVEAYLEGTQGFTEGSAHILQ-----RWIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQW
        HGV+AYL+GT+GF EGS+HILQ      +  PVAEDMFHWQATIMGP DSPY+GGVFL+ IHFPPDYPFKPPKVAF+TKVFHPNINSNGSICLDILKEQW
Subjt:  HGVEAYLEGTQGFTEGSAHILQ-----RWIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQW

Query:  SPALTISKLRGHIFNVETHNRYPPPD
        SPALTISK+   I ++ T    P PD
Subjt:  SPALTISKLRGHIFNVETHNRYPPPD

KAG5538270.1 hypothetical protein RHGRI_019006 [Rhododendron griersonianum]2.7e-4262.5Show/hide
Query:  GVEAYLEGTQGFTEGSAHILQR-------------------------W-------IGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKV
        G +  LEG QG  EGS+H+LQR                         W       IGPVAEDMFHWQATIMGP+DSPY+GGVFLV IHFPPDYPFKPPKV
Subjt:  GVEAYLEGTQGFTEGSAHILQR-------------------------W-------IGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKV

Query:  AFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        AFRTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  AFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

TXG62985.1 hypothetical protein EZV62_009979 [Acer yangbiense]2.7e-4262Show/hide
Query:  HGVEAYLEGTQGFTEGSAHILQRWIG-----------------------------PVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAF
        HG +A LEG QG  + S+H+LQ W+                              PVAEDMFHWQATIMGPSDSPY+GGVFLV IHFPPDYPFKPPKVAF
Subjt:  HGVEAYLEGTQGFTEGSAHILQRWIG-----------------------------PVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAF

Query:  RTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        RTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  RTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

TrEMBL top hitse value%identityAlignment
A0A251SWN6 Putative ubiquitin-conjugating enzyme/RWD-like protein5.6e-4676.42Show/hide
Query:  VDHGVEAYLEGTQGFTEGSAHILQRWIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPA
        +  G E  LE TQG  EGS+++LQ  IGPVAEDMFHWQATIMGP DSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPA
Subjt:  VDHGVEAYLEGTQGFTEGSAHILQRWIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPA

Query:  LTISKLRGHIFNVETHNRYPPPD
        LTISK+   I ++ T    P PD
Subjt:  LTISKLRGHIFNVETHNRYPPPD

A0A4D9B5B5 Ubiquitin-conjugating enzyme E2 D/E4.0e-4474.8Show/hide
Query:  GVEAYLEGTQGFTEGSAHILQRW---IGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPA
        G +  LEG QGF EGS++ LQR    I PV EDMFHWQATIMGP DSPY+GGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPA
Subjt:  GVEAYLEGTQGFTEGSAHILQRW---IGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPA

Query:  LTISKLRGHIFNVETHNRYPPPD
        LTISK+   I ++ T    P PD
Subjt:  LTISKLRGHIFNVETHNRYPPPD

A0A4D9B678 Ubiquitin-conjugating enzyme E2 D/E1.9e-4169.6Show/hide
Query:  GVEAYLEGTQGFTEGSAHILQR-----------------------WIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHP
        G +  LEG QGF EGS+H LQR                          PV EDMFHWQATIMGP DSPY+GGVFLV IHFPPDYPFKPPKVAFRTKVFHP
Subjt:  GVEAYLEGTQGFTEGSAHILQR-----------------------WIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHP

Query:  NINSNGSICLDILKEQWSPALTISK
        NINSNGSICLDILKEQWSPALTISK
Subjt:  NINSNGSICLDILKEQWSPALTISK

A0A5C7I1N1 UBC core domain-containing protein1.3e-4262Show/hide
Query:  HGVEAYLEGTQGFTEGSAHILQRWIG-----------------------------PVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAF
        HG +A LEG QG  + S+H+LQ W+                              PVAEDMFHWQATIMGPSDSPY+GGVFLV IHFPPDYPFKPPKVAF
Subjt:  HGVEAYLEGTQGFTEGSAHILQRWIG-----------------------------PVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAF

Query:  RTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        RTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  RTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

A0A6S7NKK4 UBC core domain-containing protein7.6e-4368.12Show/hide
Query:  MCVDHGVEAYLEGTQGFTEGSAHILQRWI-------------GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSN
        + V  G EA LE TQG +E S+++LQR I              PVAEDMFHWQATIMGP DSPY+GGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSN
Subjt:  MCVDHGVEAYLEGTQGFTEGSAHILQRWI-------------GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSN

Query:  GSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

SwissProt top hitse value%identityAlignment
P35131 Ubiquitin-conjugating enzyme E2 81.8e-4183.33Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGP++SPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

P35132 SUMO-conjugating enzyme UBC92.8e-4285.42Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

P35133 Ubiquitin-conjugating enzyme E2 101.8e-4183.33Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGPS+SPY+GGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

P35135 Ubiquitin-conjugating enzyme E2-17 kDa1.1e-4183.33Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGP+DSPY+GGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

Q94F47 Ubiquitin-conjugating enzyme E2 283.6e-4284.38Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

Arabidopsis top hitse value%identityAlignment
AT1G64230.1 ubiquitin-conjugating enzyme 282.6e-4384.38Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

AT1G64230.2 ubiquitin-conjugating enzyme 282.6e-4384.38Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

AT1G64230.4 ubiquitin-conjugating enzyme 283.4e-4379.81Show/hide
Query:  AHILQRWIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRY
        AH+L   + PVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISK+   I ++ T    
Subjt:  AHILQRWIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRY

Query:  PPPD
        P PD
Subjt:  PPPD

AT4G27960.1 ubiquitin conjugating enzyme 92.0e-4385.42Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD

AT4G27960.2 ubiquitin conjugating enzyme 92.0e-4385.42Show/hide
Query:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD
        GPVAEDMFHWQATIMGPSDSPYSGGVFLV IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISK+   I ++ T    P PD
Subjt:  GPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRGHIFNVETHNRYPPPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTAGATCATGGCGTCGAAGCGTATCTTGAAGGAACTCAAGGATTTACAGAAGGATCCGCCCACATCTTGCAGCGCTGGATAGGTCCTGTTGCTGAAGACATGTT
CCATTGGCAAGCGACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTTGTCAATATCCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTTG
CTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGTTGAGAGGT
CATATTTTTAACGTTGAGACCCATAACCGTTACCCTCCCCCTGACCGCGAGAAACTAAAATCATTTGATCGAGCAAATTGTAAACTTCAATGGTGTTTTCATGAAACAGG
TACTGCTCTCCATATGCTCATTGTTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCACACATGTACAAGACCGACCGAGCCAAGTACGAAGCCAGCGCA
CGAAGCTGGACTCAGAAGTATGCGATGGGTTGAGACGTTTTTGTAGCTTGCTGTTGAAGATGGATGATGCTGGTGGTAATCTTTGGGCTTGGCATCCTGTTGTATTTCCT
TGTTTCTTCCAGTTATTTGGGCTGTGTAGAGACGAGGCGGGGATGGAGATGGAGTTTGGAACCTTTCTGATGGAAAGGGATGATGAAGTTGAGGATGGAGATGGATATTT
TCTTGGGGAACTTTTTGATGAATATGTTTCCTGT
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTAGATCATGGCGTCGAAGCGTATCTTGAAGGAACTCAAGGATTTACAGAAGGATCCGCCCACATCTTGCAGCGCTGGATAGGTCCTGTTGCTGAAGACATGTT
CCATTGGCAAGCGACCATTATGGGACCATCTGATAGTCCTTATTCAGGAGGTGTTTTTCTTGTCAATATCCATTTTCCTCCAGATTATCCTTTCAAGCCCCCCAAGGTTG
CTTTTAGGACCAAAGTGTTTCACCCAAATATCAATAGCAATGGAAGCATTTGTCTTGACATCCTTAAAGAACAGTGGAGCCCCGCGCTTACGATTTCTAAGTTGAGAGGT
CATATTTTTAACGTTGAGACCCATAACCGTTACCCTCCCCCTGACCGCGAGAAACTAAAATCATTTGATCGAGCAAATTGTAAACTTCAATGGTGTTTTCATGAAACAGG
TACTGCTCTCCATATGCTCATTGTTGACCGATCCAAACCCAGACGACCCTCTTGTACCAGAGATCGCACACATGTACAAGACCGACCGAGCCAAGTACGAAGCCAGCGCA
CGAAGCTGGACTCAGAAGTATGCGATGGGTTGAGACGTTTTTGTAGCTTGCTGTTGAAGATGGATGATGCTGGTGGTAATCTTTGGGCTTGGCATCCTGTTGTATTTCCT
TGTTTCTTCCAGTTATTTGGGCTGTGTAGAGACGAGGCGGGGATGGAGATGGAGTTTGGAACCTTTCTGATGGAAAGGGATGATGAAGTTGAGGATGGAGATGGATATTT
TCTTGGGGAACTTTTTGATGAATATGTTTCCTGT
Protein sequenceShow/hide protein sequence
MCVDHGVEAYLEGTQGFTEGSAHILQRWIGPVAEDMFHWQATIMGPSDSPYSGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKLRG
HIFNVETHNRYPPPDREKLKSFDRANCKLQWCFHETGTALHMLIVDRSKPRRPSCTRDRTHVQDRPSQVRSQRTKLDSEVCDGLRRFCSLLLKMDDAGGNLWAWHPVVFP
CFFQLFGLCRDEAGMEMEFGTFLMERDDEVEDGDGYFLGELFDEYVSC