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Spg013102 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013102
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 reverse transcriptase-like
Genome locationscaffold1:19543143..19544206
RNA-Seq ExpressionSpg013102
SyntenySpg013102
Gene Ontology termsGO:0006950 - response to stress (biological process)
GO:0009987 - cellular process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00699.1 VIRB2-interacting protein 2 [Prunus dulcis]1.2e-1029.3Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESND-----WDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDR-DETLWSLEKSGLI------
        F+   + W     L   FP LFN+S KQ   +    +  S+D     WD GF R L + EI     L+++++ +RL   R D+ +W  + SGL       
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESND-----WDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDR-DETLWSLEKSGLI------

Query:  -----------LNPWT-IFSFIVPLLLRD-------GDGCWG---NSISPFPCLIGLNVWLVEALTGWFLK--------------GRG---KILWGMAVR
                     P+T I+    PL ++        G    G     + P  C++ L   L E  T W +               GRG   KILWG  ++
Subjt:  -----------LNPWT-IFSFIVPLLLRD-------GDGCWG---NSISPFPCLIGLNVWLVEALTGWFLK--------------GRG---KILWGMAVR

Query:  ALLWNLWLERNHRVF
        A++WNLWLERN R+F
Subjt:  ALLWNLWLERNHRVF

MCH99327.1 ribonuclease H protein [Trifolium medium]4.5e-1036.17Show/hide
Query:  NSKEEGFWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESND-WDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLEKSGL
        N ++  FW  ++ WVG+  L   FP LF+IST+++ +V   WN + ++ W+L + R LF WE   W  L+ II+++ L  + D+  W L+K+G+
Subjt:  NSKEEGFWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESND-WDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLEKSGL

RVW57494.1 LINE-1 reverse transcriptase-like [Vitis vinifera]2.6e-1027.81Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCW--NLESNDWDLGFIRGLFDWEIPNWV-VLIEIIDAIRLGGDRDETLWSLEKSGLILNPWTIFSF
        FW++   W GN+ L+  FPDLF+++ ++ ATV+  W  NL    W L  +R   DWE+      L ++ +A R+  + DE ++      +   P  I  F
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCW--NLESNDWDLGFIRGLFDWEIPNWV-VLIEIIDAIRLGGDRDETLWSLEKSGLILNPWTIFSF

Query:  IVPLLLRDGDGCWGNSISPFPCLIGLNVWLVEALTGWFLKGRGKILWGMAVRALLWNLWLERNHRVFLG
                 +  WG  + P      L+ W      G F+  + K +W      + W +W ERN   F G
Subjt:  IVPLLLRDGDGCWGNSISPFPCLIGLNVWLVEALTGWFLKGRGKILWGMAVRALLWNLWLERNHRVFLG

RVW90723.1 hypothetical protein CK203_046447 [Vitis vinifera]7.7e-1028.66Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCW--NLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLEKSGLILNPWTIFSFI
        FW  ++ W G   LA  FP LFN++ ++ ATV + W  N +   W+L F+RG  DWE+   V L++I+ + R+  + D  LW   K+G        +  +
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCW--NLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLEKSGLILNPWTIFSFI

Query:  V--PLLLRDGDGCWGNSISPFPCLIGLNVWLV-----EALTGWFLKGRGKILWGMAV
        +    LL    G W  ++   P  +    W         L G+  +G  ++LWG+ +
Subjt:  V--PLLLRDGDGCWGNSISPFPCLIGLNVWLV-----EALTGWFLKGRGKILWGMAV

XP_022149391.1 uncharacterized protein LOC111017819 [Momordica charantia]6.3e-1242.55Show/hide
Query:  ENSKEEG----FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLE
        ++SK +G    FWL++  W G   LA  FPDL+ IS K+EA V  CW+     WDLGF RGLFD E+  W  ++E ++   L  + D  +W LE
Subjt:  ENSKEEG----FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLE

TrEMBL top hitse value%identityAlignment
A0A2N9I866 Uncharacterized protein7.5e-1130Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESN--DWDLGFIRGLFDWEIPNWVVLIEIIDA-IRLGGDRDETLWSLEKSGLILNPWTIFSF
        FW   + W G+  L   +PD+F IS+  +A V    +  ++   WDL FIR + DWE  + + L+E++ A  R+G   D   W L KS      +T+ S+
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESN--DWDLGFIRGLFDWEIPNWVVLIEIIDA-IRLGGDRDETLWSLEKSGLILNPWTIFSF

Query:  IVPLLLRDGD----------GCWGNSISPFPCLIGLNVWLVEALTGW---FLKGRGKILWGMAVRALLWNLWLERNHRVF
           L     D            W      F  L  +   +VE L  W   F K R  ++W +    L+W++W ERN R F
Subjt:  IVPLLLRDGD----------GCWGNSISPFPCLIGLNVWLVEALTGW---FLKGRGKILWGMAVRALLWNLWLERNHRVF

A0A438I1Y3 Uncharacterized protein3.7e-1028.66Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCW--NLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLEKSGLILNPWTIFSFI
        FW  ++ W G   LA  FP LFN++ ++ ATV + W  N +   W+L F+RG  DWE+   V L++I+ + R+  + D  LW   K+G        +  +
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCW--NLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLEKSGLILNPWTIFSFI

Query:  V--PLLLRDGDGCWGNSISPFPCLIGLNVWLV-----EALTGWFLKGRGKILWGMAV
        +    LL    G W  ++   P  +    W         L G+  +G  ++LWG+ +
Subjt:  V--PLLLRDGDGCWGNSISPFPCLIGLNVWLV-----EALTGWFLKGRGKILWGMAV

A0A4Y1R938 VIRB2-interacting protein 25.7e-1129.3Show/hide
Query:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESND-----WDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDR-DETLWSLEKSGLI------
        F+   + W     L   FP LFN+S KQ   +    +  S+D     WD GF R L + EI     L+++++ +RL   R D+ +W  + SGL       
Subjt:  FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESND-----WDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDR-DETLWSLEKSGLI------

Query:  -----------LNPWT-IFSFIVPLLLRD-------GDGCWG---NSISPFPCLIGLNVWLVEALTGWFLK--------------GRG---KILWGMAVR
                     P+T I+    PL ++        G    G     + P  C++ L   L E  T W +               GRG   KILWG  ++
Subjt:  -----------LNPWT-IFSFIVPLLLRD-------GDGCWG---NSISPFPCLIGLNVWLVEALTGWFLK--------------GRG---KILWGMAVR

Query:  ALLWNLWLERNHRVF
        A++WNLWLERN R+F
Subjt:  ALLWNLWLERNHRVF

A0A6J1D884 uncharacterized protein LOC1110178193.0e-1242.55Show/hide
Query:  ENSKEEG----FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLE
        ++SK +G    FWL++  W G   LA  FPDL+ IS K+EA V  CW+     WDLGF RGLFD E+  W  ++E ++   L  + D  +W LE
Subjt:  ENSKEEG----FWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLE

M5WFS9 Uncharacterized protein6.8e-1232.26Show/hide
Query:  WVGNDNLASTFPDLFNISTKQEATVDQCWN--LESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLEKSGLILNPWTIFSFIVP-----
        W     L   FP LF +S+KQ +++    +  +   +WD GF R L  WEI     L+ I+D +RL   R +    L+ SGL  +  +  SFI       
Subjt:  WVGNDNLASTFPDLFNISTKQEATVDQCWN--LESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRDETLWSLEKSGLILNPWTIFSFIVP-----

Query:  -------------------LLLRDGDGCWGNSISPFPCLIGLNVWLVEALTGWFLKGRG---KILWGMAVRALLWNLWLERNHRVF
                           LLLR+ +  W   + P  C   L+ + ++AL      GRG   K+LWG  V A+ WNLWLERN R+F
Subjt:  -------------------LLLRDGDGCWGNSISPFPCLIGLNVWLVEALTGWFLKGRG---KILWGMAVRALLWNLWLERNHRVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGGCACCTACCTAGAATTTAATATTCTACGAGTTACCTTGGCAACCAAATGTAGTAAAGTCACACAGTTGTCCCAGGAGAATAGTAAAGAAGAGGGCTTCTGGCT
TGAGAGAAACACCTGGGTTGGGAACGATAATTTAGCCTCCACCTTCCCTGACTTGTTTAATATTTCCACGAAGCAAGAGGCCACTGTTGATCAATGCTGGAATTTGGAGT
CAAATGACTGGGATTTGGGGTTCATAAGAGGGCTTTTTGATTGGGAGATTCCTAATTGGGTTGTGCTGATTGAGATCATTGATGCTATTCGGCTGGGTGGTGACAGAGAT
GAGACCTTATGGAGCCTAGAGAAGTCGGGGCTGATTCTGAATCCTTGGACCATCTTTTCCTTCATTGTCCCTTTGCTGCTGCGGGATGGAGATGGTTGCTGGGGGAATTC
AATATCTCCATTTCCATGCCTGATAGGATTGAATGTGTGGCTGGTTGAGGCGTTGACGGGCTGGTTTTTGAAGGGCAGAGGAAAGATTTTGTGGGGTATGGCGGTGAGAG
CTCTGTTGTGGAACTTATGGCTTGAGAGAAACCATCGTGTTTTTTTAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGGCACCTACCTAGAATTTAATATTCTACGAGTTACCTTGGCAACCAAATGTAGTAAAGTCACACAGTTGTCCCAGGAGAATAGTAAAGAAGAGGGCTTCTGGCT
TGAGAGAAACACCTGGGTTGGGAACGATAATTTAGCCTCCACCTTCCCTGACTTGTTTAATATTTCCACGAAGCAAGAGGCCACTGTTGATCAATGCTGGAATTTGGAGT
CAAATGACTGGGATTTGGGGTTCATAAGAGGGCTTTTTGATTGGGAGATTCCTAATTGGGTTGTGCTGATTGAGATCATTGATGCTATTCGGCTGGGTGGTGACAGAGAT
GAGACCTTATGGAGCCTAGAGAAGTCGGGGCTGATTCTGAATCCTTGGACCATCTTTTCCTTCATTGTCCCTTTGCTGCTGCGGGATGGAGATGGTTGCTGGGGGAATTC
AATATCTCCATTTCCATGCCTGATAGGATTGAATGTGTGGCTGGTTGAGGCGTTGACGGGCTGGTTTTTGAAGGGCAGAGGAAAGATTTTGTGGGGTATGGCGGTGAGAG
CTCTGTTGTGGAACTTATGGCTTGAGAGAAACCATCGTGTTTTTTTAGGATAG
Protein sequenceShow/hide protein sequence
MVGTYLEFNILRVTLATKCSKVTQLSQENSKEEGFWLERNTWVGNDNLASTFPDLFNISTKQEATVDQCWNLESNDWDLGFIRGLFDWEIPNWVVLIEIIDAIRLGGDRD
ETLWSLEKSGLILNPWTIFSFIVPLLLRDGDGCWGNSISPFPCLIGLNVWLVEALTGWFLKGRGKILWGMAVRALLWNLWLERNHRVFLG