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Spg013107 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013107
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein L6, putative
Genome locationscaffold1:6106254..6108682
RNA-Seq ExpressionSpg013107
SyntenySpg013107
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000702 - Ribosomal protein L6
IPR002358 - Ribosomal protein L6, conserved site
IPR019906 - Ribosomal protein L6, bacterial-type
IPR020040 - Ribosomal protein L6, alpha-beta domain
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5032717.1 hypothetical protein JHK85_016699 [Glycine max]2.8e-4982.26Show/hide
Query:  LSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPP
        LS G  + V   +    + L  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNV+CCTGIDKQRVHQFAA VR+CKPP
Subjt:  LSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPP

Query:  EVYKGKGIMYIDEVIKKKQGKKSK
        EVYKGKGIMY+D+VIKKKQGKKSK
Subjt:  EVYKGKGIMYIDEVIKKKQGKKSK

KAG5046934.1 hypothetical protein JHK86_016340 [Glycine max]1.7e-4992.52Show/hide
Query:  VDLTAMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKK
        + L  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNV+CCTGIDKQRVHQFAA VR+CKPPEVYKGKGIMY+DEVIKK
Subjt:  VDLTAMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKK

Query:  KQGKKSK
        KQGKKSK
Subjt:  KQGKKSK

PON38569.1 Ribosomal protein [Parasponia andersonii]3.7e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_004143514.1 uncharacterized protein LOC101220210 [Cucumis sativus]1.7e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMY+DEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]5.7e-50100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

TrEMBL top hitse value%identityAlignment
A0A0A0KJ40 Ribosomal_L6 domain-containing protein8.1e-5098.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMY+DEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A2P5APW3 Ribosomal protein1.8e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A2P5EB76 Ribosomal protein1.8e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1GFP3 uncharacterized protein LOC1114535102.8e-50100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1IQJ4 uncharacterized protein LOC1114785182.8e-50100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK

SwissProt top hitse value%identityAlignment
A7HM37 50S ribosomal protein L61.7e-2036.65Show/hide
Query:  LSLVAQPSIVRPSN-----PSSLVRLQG-----GLVDHPWVGIEIAGLDGSTLWSVRNLKLNSIQ-HSLSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLK
        +S +A+  IV P+N       S ++++G      L +HP+V I++   +G+ +W   NL++   +         VG    L +  V    +   F + L+
Subjt:  LSLVAQPSIVRPSN-----PSSLVRLQG-----GLVDHPWVGIEIAGLDGSTLWSVRNLKLNSIQ-HSLSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLK

Query:  IVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKS
        IVGVGY  RA+  G  L + LGY+H+VE  VP  V+V     N +  +GIDKQRV Q AA +R  + P  Y GKGI Y+DEV+K K+GKK+
Subjt:  IVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKS

P26861 60S ribosomal protein L6, mitochondrial1.1e-3570Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N++CCTG+D Q+V QFAA V+SCKPPEVYKGKGI Y +E+I KKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

P82193 50S ribosomal protein L6, chloroplastic2.7e-1847.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  V  +G DK  V QFAA +RS +PPE YKGKG+ Y+DEV+++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Q2JQN4 50S ribosomal protein L64.9e-2040.74Show/hide
Query:  RNLKLNSIQHSLSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQ
        + LK++ +  S    Q  G+   L    VD   +   F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK+ V  
Subjt:  RNLKLNSIQHSLSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQ

Query:  FAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
         AA +R+ +PPE YKGKGI Y+ E +++K GK  K
Subjt:  FAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

Q6F1X9 50S ribosomal protein L62.7e-1842.57Show/hide
Query:  VGIEIAGLDGSTLWSVRNLKLNSIQHSLSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFK
        + I++ G + ST       + N I+H+    Q  G    L Q    L  +   F + L I GVGY  RA  AG  L L LGYSH VE T+P  + V C K
Subjt:  VGIEIAGLDGSTLWSVRNLKLNSIQHSLSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFK

Query:  NNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGK
           +  +GIDKQ V Q AA +RS + PE YKGKGI Y DE+I +K+GK
Subjt:  NNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGK

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family2.8e-1843.88Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK
        F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK  + QFAA VR  +PPE YKGKG+ Y DE++++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein1.6e-5093.14Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK
        MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGIDKQRVHQFAA VRSCKPPE YKGKGIMY DEV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKK

Query:  SK
        SK
Subjt:  SK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCAGTCTCGCCCTCAGCTTTCCCCTTCAATTCCTCCTCGCACTCAATCTCTCTCTTGTAGCACAACCTTCAATTGTGCGCCCCAGTAATCCCTCCTCTCTGGTACGACT
TCAAGGCGGGCTTGTGGACCATCCATGGGTGGGGATTGAGATTGCGGGGCTGGATGGCTCGACACTGTGGAGTGTCAGAAATCTTAAATTGAATTCTATTCAACATAGTT
TATCACATGGACAGTTTGTGGGTGTGTTGACCTGTTTACAGCAAACAGCCGTTGATTTAACTGCAATGGAGGCTAAATTTTTTCGCTTCCTTAAGATTGTGGGAGTTGGT
TACAAAGCTAGAGCAGAGGCAGCAGGACGTCTTTTGTATCTTAAACTGGGATACAGCCATGAAGTTGAACTAACAGTTCCTCCAGCAGTCCGGGTCTTTTGCTTCAAAAA
CAATGTGGTTTGCTGCACGGGAATTGACAAACAAAGGGTACACCAATTCGCTGCTGCAGTTCGTAGCTGTAAGCCACCCGAAGTATACAAAGGCAAGGGCATAATGTACA
TCGACGAGGTCATCAAAAAGAAACAAGGAAAGAAGTCTAAATAA
mRNA sequenceShow/hide mRNA sequence
CTCAGTCTCGCCCTCAGCTTTCCCCTTCAATTCCTCCTCGCACTCAATCTCTCTCTTGTAGCACAACCTTCAATTGTGCGCCCCAGTAATCCCTCCTCTCTGGTACGACT
TCAAGGCGGGCTTGTGGACCATCCATGGGTGGGGATTGAGATTGCGGGGCTGGATGGCTCGACACTGTGGAGTGTCAGAAATCTTAAATTGAATTCTATTCAACATAGTT
TATCACATGGACAGTTTGTGGGTGTGTTGACCTGTTTACAGCAAACAGCCGTTGATTTAACTGCAATGGAGGCTAAATTTTTTCGCTTCCTTAAGATTGTGGGAGTTGGT
TACAAAGCTAGAGCAGAGGCAGCAGGACGTCTTTTGTATCTTAAACTGGGATACAGCCATGAAGTTGAACTAACAGTTCCTCCAGCAGTCCGGGTCTTTTGCTTCAAAAA
CAATGTGGTTTGCTGCACGGGAATTGACAAACAAAGGGTACACCAATTCGCTGCTGCAGTTCGTAGCTGTAAGCCACCCGAAGTATACAAAGGCAAGGGCATAATGTACA
TCGACGAGGTCATCAAAAAGAAACAAGGAAAGAAGTCTAAATAA
Protein sequenceShow/hide protein sequence
LSLALSFPLQFLLALNLSLVAQPSIVRPSNPSSLVRLQGGLVDHPWVGIEIAGLDGSTLWSVRNLKLNSIQHSLSHGQFVGVLTCLQQTAVDLTAMEAKFFRFLKIVGVG
YKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK