; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013125 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013125
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold1:19200010..19202576
RNA-Seq ExpressionSpg013125
SyntenySpg013125
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.6e-2224.83Show/hide
Query:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST
        + W+V +G+ I FWL NW+   PL     RL+ LS+NK  +V+E W+ S   W+    RPL D E   W+ +   LP P   RG     W  + ++ F T
Subjt:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST

Query:  -----------------------------------------------------------------------------------KYARSILSIYHALGILS
                                                                                            Y++ + S   AL   +
Subjt:  -----------------------------------------------------------------------------------KYARSILSIYHALGILS

Query:  VPPASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL
          P  +QS  +++ +    +Q+ ++  N +   LW +W ERNNRIF+++ ++   LWED ++   LW+ KSK FS+Y   +IALN  +F+
Subjt:  VPPASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.0e-1922.87Show/hide
Query:  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDF
        +R V W+++NG+S  FW  +W    PL +   RL+ LS+NK+ ++ + W+ +   W+ +PRR L + E   W EL   L       G D   W  + +  
Subjt:  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDF

Query:  FSTKYARSIL-------------SIYHALGILSVPPASI-------------------------------------------------------------
        ++    +  L             + +  L   S+P   I                                                             
Subjt:  FSTKYARSIL-------------SIYHALGILSVPPASI-------------------------------------------------------------

Query:  ----------QSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESF
                  +  C  + ++K  +++ ++  N   ++LW +W ERN RIF  + ++  ++WED+ +LA LWT++S  FS+Y AS+IALN  +F
Subjt:  ----------QSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESF

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.6e-2325.17Show/hide
Query:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST
        + W+V +G+ I FWL NW+   PL  V  RL+ LS+NK  +V++ W+ S + WN    RPL D E   W+ +   LP P   RG     W  + ++ F T
Subjt:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST

Query:  KYARSIL------------SIYHALGILSVP---------------------------------------------------------------------
           +  L            S+Y  L  +  P                                                                     
Subjt:  KYARSIL------------SIYHALGILSVP---------------------------------------------------------------------

Query:  --PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL
          P  ++S  +++ +    +Q+ ++  N     LW +W ERNNRIF+++ + +  LWED+++   LW+ KSK FS+Y   +IALN  +F+
Subjt:  --PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-2224.83Show/hide
Query:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST
        + W+V +G+ I FWL NW+   PL     RL+ LS+NK  +V++ W+ S + WN    RPL D E   W+ +   LP P   RG     W  + ++ F T
Subjt:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST

Query:  KYARSIL------------SIYHALGILSVP---------------------------------------------------------------------
           +  L            S+Y  L  +  P                                                                     
Subjt:  KYARSIL------------SIYHALGILSVP---------------------------------------------------------------------

Query:  --PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL
          P  ++S  +++ +    +Q+ ++  N     LW +W ERNNRIF+++ + +  LWED+++   LW+ KSK FS+Y   +IALN  +F+
Subjt:  --PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1822.87Show/hide
Query:  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDF
        +R V W+++NG+S  FW  +W    PL     RLY LS+NK  ++ + W+ +   W+ +PRR L + E+  W EL   +       G D   W  + +  
Subjt:  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDF

Query:  FSTKYARSIL-------------SIYHALGILSVPPASI-------------------------------------------------------------
        ++    +  L             + +  L   S+P   I                                                             
Subjt:  FSTKYARSIL-------------SIYHALGILSVPPASI-------------------------------------------------------------

Query:  ----------QSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESF
                  +  C  + ++K  +++ ++  N   ++LW +W ERN RIF  + ++  ++WED+ +LA LWT++S  FS+Y AS+IALN  +F
Subjt:  ----------QSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESF

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.2e-2224.83Show/hide
Query:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST
        + W+V +G+ I FWL NW+   PL     RL+ LS+NK  +V+E W+ S   W+    RPL D E   W+ +   LP P   RG     W  + ++ F T
Subjt:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST

Query:  -----------------------------------------------------------------------------------KYARSILSIYHALGILS
                                                                                            Y++ + S   AL   +
Subjt:  -----------------------------------------------------------------------------------KYARSILSIYHALGILS

Query:  VPPASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL
          P  +QS  +++ +    +Q+ ++  N +   LW +W ERNNRIF+++ ++   LWED ++   LW+ KSK FS+Y   +IALN  +F+
Subjt:  VPPASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein1.9e-1922.87Show/hide
Query:  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDF
        +R V W+++NG+S  FW  +W    PL +   RL+ LS+NK+ ++ + W+ +   W+ +PRR L + E   W EL   L       G D   W  + +  
Subjt:  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDF

Query:  FSTKYARSIL-------------SIYHALGILSVPPASI-------------------------------------------------------------
        ++    +  L             + +  L   S+P   I                                                             
Subjt:  FSTKYARSIL-------------SIYHALGILSVPPASI-------------------------------------------------------------

Query:  ----------QSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESF
                  +  C  + ++K  +++ ++  N   ++LW +W ERN RIF  + ++  ++WED+ +LA LWT++S  FS+Y AS+IALN  +F
Subjt:  ----------QSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESF

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein2.2e-2325.17Show/hide
Query:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST
        + W+V +G+ I FWL NW+   PL  V  RL+ LS+NK  +V++ W+ S + WN    RPL D E   W+ +   LP P   RG     W  + ++ F T
Subjt:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST

Query:  KYARSIL------------SIYHALGILSVP---------------------------------------------------------------------
           +  L            S+Y  L  +  P                                                                     
Subjt:  KYARSIL------------SIYHALGILSVP---------------------------------------------------------------------

Query:  --PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL
          P  ++S  +++ +    +Q+ ++  N     LW +W ERNNRIF+++ + +  LWED+++   LW+ KSK FS+Y   +IALN  +F+
Subjt:  --PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein6.4e-2324.83Show/hide
Query:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST
        + W+V +G+ I FWL NW+   PL     RL+ LS+NK  +V++ W+ S + WN    RPL D E   W+ +   LP P   RG     W  + ++ F T
Subjt:  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST

Query:  KYARSIL------------SIYHALGILSVP---------------------------------------------------------------------
           +  L            S+Y  L  +  P                                                                     
Subjt:  KYARSIL------------SIYHALGILSVP---------------------------------------------------------------------

Query:  --PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL
          P  ++S  +++ +    +Q+ ++  N     LW +W ERNNRIF+++ + +  LWED+++   LW+ KSK FS+Y   +IALN  +F+
Subjt:  --PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein5.6e-1923.21Show/hide
Query:  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDF
        +R V W+++NG+S  FW  +W    PL     RLY LS+NK  ++ + W+ +   W+ +PRR L + E   W EL   L       G+D   W  + +  
Subjt:  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDF

Query:  FSTKYARSIL-------------SIYHALGILSVPPASI-------------------------------------------------------------
        ++    +  L             + +  L   S+P   I                                                             
Subjt:  FSTKYARSIL-------------SIYHALGILSVPPASI-------------------------------------------------------------

Query:  ----------QSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESF
                  +  C  + ++K  +++ ++  N   ++LW +W ERN RIF  + ++  ++WED+ +LA LWT++S  FS+Y AS+IALN  +F
Subjt:  ----------QSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTTCTCTCTCGGCCCTCTGGCGTGGCCCGATGGGCGACACTCGACGTGCCACCACTTCACTGTCTGCTCAGTGAGGGTCACAACCTACTCTCTTCTAGTATGGT
TGTGACACGCAGCGCCACTCACACGGACCTAGAACGTGCTGTAAGATGGGAGGTGCGCAACGGTAAATCCATCCTTTTTTGGCTCTACAACTGGTCTGTTCTTGGTCCTT
TGAAATATGTTTGTGATCGTCTCTATCAGTTGTCTTCAAACAAAAATCTCACAGTTGAGGAAGCTTGGTCGATTTCGGATAGAGTGTGGAATTTTAGTCCTCGCCGGCCT
CTCCTTGATAGAGAAGTTCAAAGATGGAATGAGCTGTCTGGTCTTTTACCCATTCCAGATTCTTTTCGAGGTTCTGATGTTCAACGATGGCTTGCTTCTGAAGATGACTT
TTTCTCCACAAAATATGCTCGATCCATCCTATCGATTTACCATGCTTTGGGTATTTTATCTGTTCCTCCAGCATCAATCCAATCCTTTTGCGAAGACTTGTTTGCTTTTA
AAGCCTCATCTCAAAGGAAAATTCTTCACAGGAATATCTCTATTGCTTCCCTTTGGATTGTGTGGAATGAGCGCAACAATCGCATTTTTCAGGAAAGGGCTCGCAGTTGG
ACTCAACTTTGGGAGGATGTCATTTCTCTTGCCGCTCTTTGGACTACAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTACTATTGCCTTAAATTATGAATCCTTTTT
GTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACTTCTCTCTCGGCCCTCTGGCGTGGCCCGATGGGCGACACTCGACGTGCCACCACTTCACTGTCTGCTCAGTGAGGGTCACAACCTACTCTCTTCTAGTATGGT
TGTGACACGCAGCGCCACTCACACGGACCTAGAACGTGCTGTAAGATGGGAGGTGCGCAACGGTAAATCCATCCTTTTTTGGCTCTACAACTGGTCTGTTCTTGGTCCTT
TGAAATATGTTTGTGATCGTCTCTATCAGTTGTCTTCAAACAAAAATCTCACAGTTGAGGAAGCTTGGTCGATTTCGGATAGAGTGTGGAATTTTAGTCCTCGCCGGCCT
CTCCTTGATAGAGAAGTTCAAAGATGGAATGAGCTGTCTGGTCTTTTACCCATTCCAGATTCTTTTCGAGGTTCTGATGTTCAACGATGGCTTGCTTCTGAAGATGACTT
TTTCTCCACAAAATATGCTCGATCCATCCTATCGATTTACCATGCTTTGGGTATTTTATCTGTTCCTCCAGCATCAATCCAATCCTTTTGCGAAGACTTGTTTGCTTTTA
AAGCCTCATCTCAAAGGAAAATTCTTCACAGGAATATCTCTATTGCTTCCCTTTGGATTGTGTGGAATGAGCGCAACAATCGCATTTTTCAGGAAAGGGCTCGCAGTTGG
ACTCAACTTTGGGAGGATGTCATTTCTCTTGCCGCTCTTTGGACTACAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTACTATTGCCTTAAATTATGAATCCTTTTT
GTAG
Protein sequenceShow/hide protein sequence
MALLSRPSGVARWATLDVPPLHCLLSEGHNLLSSSMVVTRSATHTDLERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRP
LLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSILSIYHALGILSVPPASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSW
TQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL