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Spg013161 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013161
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Genome locationscaffold1:21005361..21008446
RNA-Seq ExpressionSpg013161
SyntenySpg013161
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ATV97007.1 DNA-directed RNA polymerase beta subunit [Eschweilera wachenheimii]3.9e-0687.88Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

ATV98099.1 DNA-directed RNA polymerase beta subunit [Lecythis ampla]1.1e-0584.85Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+IIDYSL EWKELGEEEP  +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

ATV98369.1 DNA-directed RNA polymerase beta subunit [Eschweilera pittieri]3.9e-0687.88Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

MBC9828788.1 hypothetical protein [Adiantum capillus-veneris]3.0e-0674.42Show/hide
Query:  LSVEEHVLGCAIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        +   + VLG AIREQLADLDLRLIIDYSL EWKELGEE PA +
Subjt:  LSVEEHVLGCAIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

YP_009430618.1 RNA polymerase beta' subunit [Gynostemma cardiospermum]6.6e-0667.35Show/hide
Query:  PPFEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        P F+     E   G  AIREQLADLDLRLIIDYSL EWKELGEE PA +
Subjt:  PPFEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

TrEMBL top hitse value%identityAlignment
A0A286KTW9 DNA-directed RNA polymerase subunit beta'3.2e-0667.35Show/hide
Query:  PPFEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        P F+     E   G  AIREQLADLDLRLIIDYSL EWKELGEE PA +
Subjt:  PPFEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

A0A2H4NU33 DNA-directed RNA polymerase subunit beta'1.9e-0687.88Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

A0A2H4NUD4 DNA-directed RNA polymerase subunit beta'1.9e-0687.88Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

A0A2H4NY39 DNA-directed RNA polymerase subunit beta'1.9e-0687.88Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

A0A2H4NZ42 DNA-directed RNA polymerase subunit beta'1.9e-0687.88Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

SwissProt top hitse value%identityAlignment
A1XGM9 DNA-directed RNA polymerase subunit beta'2.8e-0784.85Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLRLIID SL EWKELGEE PA +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

Q09X26 DNA-directed RNA polymerase subunit beta'2.1e-0763.83Show/hide
Query:  FEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        F+A    E   G  AIREQLADLDL +IIDYSL EWKELGEE P  +
Subjt:  FEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

Q49L07 DNA-directed RNA polymerase subunit beta'5.6e-0881.82Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+IIDYSL EWKELGEE P  +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

Q4VZP2 DNA-directed RNA polymerase subunit beta'1.9e-0887.88Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLRLIIDYSL EWKELGEE PA +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

Q589B9 DNA-directed RNA polymerase subunit beta'4.3e-0865.96Show/hide
Query:  FEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        F+A    E   G  AIREQLADLDLR IIDYS AEWKELGEE+P  +
Subjt:  FEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS

Arabidopsis top hitse value%identityAlignment
ATCG00180.1 DNA-directed RNA polymerase family protein4.9e-0772.73Show/hide
Query:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS
        AIREQLADLDLR+II+ SL EWK+LGEE P  +
Subjt:  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCAAATTACCCCCCCTTCGAGGCCCTTAGCGTCGAGGAACATGTACTAGGGTGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTA
TTCATTGGCAGAATGGAAAGAATTAGGAGAAGAAGAACCAGCGGCTAGTGCGCAGCCCAAGGTATCTCCTTCTCTCCTTCCTCTTCTCCTCGTGAGTGCAGCCGCCAAGT
TCGTGGATGCTCCTTCTTCCCCAACCGCGGAAGGGGCGGCGGTTCTTCGTGGGTTTTTCCGTTCTTCGCGTGCACTTCCGACCGGTCCGTGCGACGTCTCCGACGAAGCT
GTACCAGTCTCGGTGTGCGACGGCTGCGGTTTCAACGTGCGTGACGAGTTCGTGGCGACAGAGCAGCAGGTGAGTTTTCGCGGGCGTTTGGCGTTGACGGCAACGACTTT
CAGGCGGTGTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCACCAAATTACCCCCCCTTCGAGGCCCTTAGCGTCGAGGAACATGTACTAGGGTGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTA
TTCATTGGCAGAATGGAAAGAATTAGGAGAAGAAGAACCAGCGGCTAGTGCGCAGCCCAAGGTATCTCCTTCTCTCCTTCCTCTTCTCCTCGTGAGTGCAGCCGCCAAGT
TCGTGGATGCTCCTTCTTCCCCAACCGCGGAAGGGGCGGCGGTTCTTCGTGGGTTTTTCCGTTCTTCGCGTGCACTTCCGACCGGTCCGTGCGACGTCTCCGACGAAGCT
GTACCAGTCTCGGTGTGCGACGGCTGCGGTTTCAACGTGCGTGACGAGTTCGTGGCGACAGAGCAGCAGGTGAGTTTTCGCGGGCGTTTGGCGTTGACGGCAACGACTTT
CAGGCGGTGTGAATAG
Protein sequenceShow/hide protein sequence
MSPNYPPFEALSVEEHVLGCAIREQLADLDLRLIIDYSLAEWKELGEEEPAASAQPKVSPSLLPLLLVSAAAKFVDAPSSPTAEGAAVLRGFFRSSRALPTGPCDVSDEA
VPVSVCDGCGFNVRDEFVATEQQVSFRGRLALTATTFRRCE